fix gradle

Author: Rustam Sadykov

utbot-analytics/build.gradle

@@ -76,6 +76,7 @@ jar {
         attributes 'Main-Class': 'org.utbot.QualityAnalysisKt'
     }
 
+    dependsOn configurations.runtimeClasspath
     from {
         configurations.runtimeClasspath.collect { it.isDirectory() ? it : zipTree(it) }
     }

utbot-instrumentation/build.gradle

@@ -25,10 +25,11 @@ jar {
         )
     }
 
+    dependsOn configurations.compileClasspath
     from {
-        configurations.compileClasspath.collect {
-            it.isDirectory() ? it : zipTree(it)
-        }
+        sourceSets.main.output + configurations.compileClasspath
+                .findAll {it.name.endsWith('jar')  }
+                .collect { zipTree(it) }
     }
 }
 

utbot-junit-contest/build.gradle

@@ -87,6 +87,7 @@ jar { dependsOn classes
 
     version '1.0'
 
+    dependsOn configurations.runtimeClasspath
     from {
         sourceSets.main.output + configurations.runtimeClasspath.collect { it.isDirectory() ? it : zipTree(it) }
     }
@@ -109,6 +110,7 @@ task monitoringJar(type: Jar) { dependsOn classes
 
     version '1.0'
 
+    dependsOn configurations.runtimeClasspath
     from {
         sourceSets.main.output + configurations.runtimeClasspath.collect { it.isDirectory() ? it : zipTree(it) }
     }