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22 changes: 22 additions & 0 deletions notebooks.md
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Expand Up @@ -183,6 +183,28 @@ Many different technologies can be visualised out-of-the-box. See below for a co

notebooks/examples/technology_cosmx.ipynb

.. grid-item::

.. container:: custom-card

.. image:: _static/img/visium_hd.png
:target: notebooks/examples/technology_visium_hd.html

.. toctree::
:maxdepth: 1

notebooks/examples/technology_visium_hd.ipynb


```

## Advanced

Advanced tutorials that showcase more complex functionalities of the SpatialData ecosystem.

```{eval-rst}
.. grid:: 2 3 3 3

.. grid-item::

.. container:: custom-card
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2 changes: 1 addition & 1 deletion notebooks/examples/tables.ipynb
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},
"source": [
"### Change the annotation target of table\n",
"We have a helper function, `set_table_annotates_element` to change the metadata regarding the annotation target of table in a `SpatialData` object. This function takes as arguments the `table_name`, `region` and optionally the `region_key` and `instance_key`. The latter two don't have to necessarily be specified if the table is already annotating a `SpatialElement`. The current values will be reused if not specified. For any of the arguments specified, they must be present at their respective location in the `SpatialData`object or table."
"We have a helper function, `set_table_annotates_spatialelement` to change the metadata regarding the annotation target of table in a `SpatialData` object. This function takes as arguments the `table_name`, `region` and optionally the `region_key` and `instance_key`. The latter two don't have to necessarily be specified if the table is already annotating a `SpatialElement`. The current values will be reused if not specified. For any of the arguments specified, they must be present at their respective location in the `SpatialData`object or table."
]
},
{
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1,084 changes: 1,084 additions & 0 deletions notebooks/examples/technology_visium_hd.ipynb

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