diff --git a/go.mod b/go.mod
index cea57d8fd1..ad8c7f63d6 100644
--- a/go.mod
+++ b/go.mod
@@ -10,12 +10,12 @@ require (
 	github.com/davecgh/go-spew v1.1.1
 	github.com/fatih/structtag v1.2.0
 	github.com/go-sql-driver/mysql v1.10.0
-	github.com/google/cel-go v0.29.0
+	github.com/google/cel-go v0.30.0
 	github.com/google/go-cmp v0.7.0
 	github.com/jackc/pgx/v5 v5.10.0
 	github.com/jinzhu/inflection v1.0.0
 	github.com/lib/pq v1.12.3
-	github.com/ncruces/go-sqlite3 v0.34.4
+	github.com/ncruces/go-sqlite3 v0.35.2
 	github.com/pganalyze/pg_query_go/v6 v6.2.2
 	github.com/riza-io/grpc-go v0.2.0
 	github.com/spf13/cobra v1.10.2
@@ -26,7 +26,7 @@ require (
 	github.com/tetratelabs/wazero v1.12.0
 	github.com/wasilibs/go-pgquery v0.0.0-20250409022910-10ac41983c07
 	github.com/xeipuuv/gojsonschema v1.2.0
-	golang.org/x/sync v0.21.0
+	golang.org/x/sync v0.22.0
 	google.golang.org/grpc v1.82.1
 	google.golang.org/protobuf v1.36.11
 	gopkg.in/yaml.v3 v3.0.1
@@ -40,7 +40,7 @@ require (
 	github.com/jackc/pgservicefile v0.0.0-20240606120523-5a60cdf6a761 // indirect
 	github.com/jackc/puddle/v2 v2.2.2 // indirect
 	github.com/kr/text v0.2.0 // indirect
-	github.com/ncruces/go-sqlite3-wasm/v2 v2.6.35302 // indirect
+	github.com/ncruces/go-sqlite3-wasm/v3 v3.2.35303 // indirect
 	github.com/ncruces/julianday v1.0.0 // indirect
 	github.com/rogpeppe/go-internal v1.10.0 // indirect
 	github.com/wasilibs/wazero-helpers v0.0.0-20240620070341-3dff1577cd52 // indirect
@@ -49,7 +49,7 @@ require (
 	go.yaml.in/yaml/v3 v3.0.4 // indirect
 	golang.org/x/exp v0.0.0-20250620022241-b7579e27df2b // indirect
 	golang.org/x/net v0.55.0 // indirect
-	golang.org/x/sys v0.45.0 // indirect
+	golang.org/x/sys v0.46.0 // indirect
 	golang.org/x/text v0.39.0 // indirect
 	google.golang.org/genproto/googleapis/api v0.0.0-20260414002931-afd174a4e478 // indirect
 	google.golang.org/genproto/googleapis/rpc v0.0.0-20260414002931-afd174a4e478 // indirect
diff --git a/go.sum b/go.sum
index 85b460fdce..32adc810d7 100644
--- a/go.sum
+++ b/go.sum
@@ -23,8 +23,8 @@ github.com/go-sql-driver/mysql v1.10.0 h1:Q+1LV8DkHJvSYAdR83XzuhDaTykuDx0l6fkXxo
 github.com/go-sql-driver/mysql v1.10.0/go.mod h1:M+cqaI7+xxXGG9swrdeUIoPG3Y3KCkF0pZej+SK+nWk=
 github.com/golang/protobuf v1.5.4 h1:i7eJL8qZTpSEXOPTxNKhASYpMn+8e5Q6AdndVa1dWek=
 github.com/golang/protobuf v1.5.4/go.mod h1:lnTiLA8Wa4RWRcIUkrtSVa5nRhsEGBg48fD6rSs7xps=
-github.com/google/cel-go v0.29.0 h1:fEG+Ja3YRwNOqnQxTyJwoByAUAvTuxUGiro/jhrm4F4=
-github.com/google/cel-go v0.29.0/go.mod h1:X0bD6iVNR8pkROSOoHVdgTkzmRcosof7WQqCD6wcMc8=
+github.com/google/cel-go v0.30.0 h1:ll54AkzKunWkBn9wSoiUXbFZXYZTkdJGNXTBXUoolGo=
+github.com/google/cel-go v0.30.0/go.mod h1:X0bD6iVNR8pkROSOoHVdgTkzmRcosof7WQqCD6wcMc8=
 github.com/google/go-cmp v0.7.0 h1:wk8382ETsv4JYUZwIsn6YpYiWiBsYLSJiTsyBybVuN8=
 github.com/google/go-cmp v0.7.0/go.mod h1:pXiqmnSA92OHEEa9HXL2W4E7lf9JzCmGVUdgjX3N/iU=
 github.com/google/uuid v1.6.0 h1:NIvaJDMOsjHA8n1jAhLSgzrAzy1Hgr+hNrb57e+94F0=
@@ -47,10 +47,10 @@ github.com/kr/text v0.2.0 h1:5Nx0Ya0ZqY2ygV366QzturHI13Jq95ApcVaJBhpS+AY=
 github.com/kr/text v0.2.0/go.mod h1:eLer722TekiGuMkidMxC/pM04lWEeraHUUmBw8l2grE=
 github.com/lib/pq v1.12.3 h1:tTWxr2YLKwIvK90ZXEw8GP7UFHtcbTtty8zsI+YjrfQ=
 github.com/lib/pq v1.12.3/go.mod h1:/p+8NSbOcwzAEI7wiMXFlgydTwcgTr3OSKMsD2BitpA=
-github.com/ncruces/go-sqlite3 v0.34.4 h1:bp8jd1o2CMvjkrrp1lOtHDu1TdzExNWACt+piQeMwzg=
-github.com/ncruces/go-sqlite3 v0.34.4/go.mod h1:tOyhDWnzlrzflKIGw177imjuO4ZEbfOS1NJ67B1BanQ=
-github.com/ncruces/go-sqlite3-wasm/v2 v2.6.35302 h1:IZCiInPIp6OhOc1skMDGOBMwMQuE1TK+QqVe35vd/ro=
-github.com/ncruces/go-sqlite3-wasm/v2 v2.6.35302/go.mod h1:ELHF6yqC51E0DiitfabHXl/aKKouCihugbhNT5a+yEY=
+github.com/ncruces/go-sqlite3 v0.35.2 h1:YOoumI7tkxMIm1MBrkucRb1qtvAPEh8RrZtv6U+2aLs=
+github.com/ncruces/go-sqlite3 v0.35.2/go.mod h1:lVlozMCF6VGdI1FOgl0pBfMviw6DIh/QIMKQyjmg2ac=
+github.com/ncruces/go-sqlite3-wasm/v3 v3.2.35303 h1:td8kMW1bWwzc7NnlzPjQV4GbDNLkje8htGBfbZRaSh8=
+github.com/ncruces/go-sqlite3-wasm/v3 v3.2.35303/go.mod h1:o8gr9w/50fXA5TDskg6bNUjvqmFfw4KaXth4q+yDSjg=
 github.com/ncruces/julianday v1.0.0 h1:fH0OKwa7NWvniGQtxdJRxAgkBMolni2BjDHaWTxqt7M=
 github.com/ncruces/julianday v1.0.0/go.mod h1:Dusn2KvZrrovOMJuOt0TNXL6tB7U2E8kvza5fFc9G7g=
 github.com/pganalyze/pg_query_go/v6 v6.2.2 h1:O0L6zMC226R82RF3X5n0Ki6HjytDsoAzuzp4ATVAHNo=
@@ -108,10 +108,10 @@ golang.org/x/exp v0.0.0-20250620022241-b7579e27df2b h1:M2rDM6z3Fhozi9O7NWsxAkg/y
 golang.org/x/exp v0.0.0-20250620022241-b7579e27df2b/go.mod h1:3//PLf8L/X+8b4vuAfHzxeRUl04Adcb341+IGKfnqS8=
 golang.org/x/net v0.55.0 h1:bcvxaJn3e1U6InsFWt1JUq1aSjnRxLzT2rtD2KfkDF8=
 golang.org/x/net v0.55.0/go.mod h1:L5U2KuzuOe1lY7Z+aWVIKK6qEeJXnXV9yzGA+WCHJww=
-golang.org/x/sync v0.21.0 h1:HLII4xRRTtCRkxYp4HNFF0Js/Og6q2i++KXbg0gHCwM=
-golang.org/x/sync v0.21.0/go.mod h1:9xrNwdLfx4jkKbNva9FpL6vEN7evnE43NNNJQ2LF3+0=
-golang.org/x/sys v0.45.0 h1:dO4czNzziLiiXplLQgBCEpCvXQ3dnkn0SdaZSYdQ+FY=
-golang.org/x/sys v0.45.0/go.mod h1:4GL1E5IUh+htKOUEOaiffhrAeqysfVGipDYzABqnCmw=
+golang.org/x/sync v0.22.0 h1:SZjpbeLmrCk4xhRSZFNZW5gFUeCeFgjekvI/+gfScek=
+golang.org/x/sync v0.22.0/go.mod h1:9xrNwdLfx4jkKbNva9FpL6vEN7evnE43NNNJQ2LF3+0=
+golang.org/x/sys v0.46.0 h1:noSf2Fq6F8DBgS+LysIkx7rIExoNHJsxOAtPp4rthXw=
+golang.org/x/sys v0.46.0/go.mod h1:4GL1E5IUh+htKOUEOaiffhrAeqysfVGipDYzABqnCmw=
 golang.org/x/text v0.39.0 h1:UbZz4pLOvn600D6Oh6GGEI6VAmndrEBLv8/6BEXzyus=
 golang.org/x/text v0.39.0/go.mod h1:3UwRclnC2g0TU9x8PZiyfOajCd1zaUNHF9cvqcQZ+ZM=
 gonum.org/v1/gonum v0.17.0 h1:VbpOemQlsSMrYmn7T2OUvQ4dqxQXU+ouZFQsZOx50z4=
diff --git a/internal/cmd/vet_sqlite.go b/internal/cmd/vet_sqlite.go
index 7b3e39afe5..ed79fe78f4 100644
--- a/internal/cmd/vet_sqlite.go
+++ b/internal/cmd/vet_sqlite.go
@@ -2,4 +2,6 @@ package cmd
 
 import (
 	_ "github.com/ncruces/go-sqlite3/driver"
+
+	_ "github.com/sqlc-dev/sqlc/internal/sqlite3ext"
 )
diff --git a/internal/engine/sqlite/analyzer/analyze.go b/internal/engine/sqlite/analyzer/analyze.go
index adbdd77fc6..7eb27a4b9b 100644
--- a/internal/engine/sqlite/analyzer/analyze.go
+++ b/internal/engine/sqlite/analyzer/analyze.go
@@ -16,6 +16,7 @@ import (
 	"github.com/sqlc-dev/sqlc/internal/sql/named"
 	"github.com/sqlc-dev/sqlc/internal/sql/sqlerr"
 	"github.com/sqlc-dev/sqlc/internal/sqlcdebug"
+	_ "github.com/sqlc-dev/sqlc/internal/sqlite3ext"
 )
 
 var debugDatabases = sqlcdebug.New("databases")
diff --git a/internal/sqlite3ext/sqlite3ext.go b/internal/sqlite3ext/sqlite3ext.go
new file mode 100644
index 0000000000..b3382e4920
--- /dev/null
+++ b/internal/sqlite3ext/sqlite3ext.go
@@ -0,0 +1,21 @@
+// Package sqlite3ext registers the SQLite extensions sqlc relies on with
+// github.com/ncruces/go-sqlite3.
+//
+// As of go-sqlite3 v0.35.0 the FTS5 and R*Tree/Geopoly extensions are compiled
+// separately and are no longer part of the default build. Registering them as
+// auto extensions makes them available on every connection, matching the
+// behavior of earlier releases.
+//
+// Import this package for side effects wherever a SQLite connection is opened.
+package sqlite3ext
+
+import (
+	"github.com/ncruces/go-sqlite3"
+	"github.com/ncruces/go-sqlite3/ext/fts5"
+	"github.com/ncruces/go-sqlite3/ext/rtree"
+)
+
+func init() {
+	sqlite3.AutoExtension(fts5.Register)
+	sqlite3.AutoExtension(rtree.Register)
+}
diff --git a/internal/sqltest/sqlite.go b/internal/sqltest/sqlite.go
index a3e5db2611..b102fc97f9 100644
--- a/internal/sqltest/sqlite.go
+++ b/internal/sqltest/sqlite.go
@@ -9,6 +9,7 @@ import (
 	_ "github.com/ncruces/go-sqlite3/driver"
 
 	"github.com/sqlc-dev/sqlc/internal/sql/sqlpath"
+	_ "github.com/sqlc-dev/sqlc/internal/sqlite3ext"
 )
 
 func SQLite(t *testing.T, migrations []string) (*sql.DB, func()) {