diff --git a/.github/workflows/check_changelogs.yml b/.github/workflows/check_changelogs.yml index 0033b43db2..b1e8fa8f32 100644 --- a/.github/workflows/check_changelogs.yml +++ b/.github/workflows/check_changelogs.yml @@ -29,3 +29,6 @@ jobs: - name: Check zarr-metadata changelog entries run: uv run --no-sync python ci/check_changelog_entries.py packages/zarr-metadata/changes + + - name: Check zarr-http-server changelog entries + run: uv run --no-sync python ci/check_changelog_entries.py packages/zarr-http-server/changes diff --git a/.github/workflows/zarr-http-server-release.yml b/.github/workflows/zarr-http-server-release.yml new file mode 100644 index 0000000000..29489c7c0a --- /dev/null +++ b/.github/workflows/zarr-http-server-release.yml @@ -0,0 +1,117 @@ +name: zarr-http-server release + +on: + workflow_dispatch: + push: + tags: + - 'zarr_http_server-v*' + +permissions: + contents: read + +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: false + +jobs: + build: + name: Build wheel and sdist + runs-on: ubuntu-latest + defaults: + run: + shell: bash + working-directory: packages/zarr-http-server + steps: + - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0 + with: + persist-credentials: false + fetch-depth: 0 # hatch-vcs needs full history + tags + + - name: Install Hatch + uses: pypa/hatch@257e27e51a6a5616ed08a39a408a21c35c9931bc + with: + version: '1.16.5' + + - name: Build + run: hatch build + + - uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1 + with: + name: zarr-http-server-dist + path: packages/zarr-http-server/dist + + test_artifacts: + name: Test built artifacts + needs: [build] + runs-on: ubuntu-latest + steps: + - uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c # v8.0.1 + with: + name: zarr-http-server-dist + path: dist + + - name: Install uv + uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2 + with: + enable-cache: false + + - name: Set up Python + run: uv python install 3.12 + + - name: Install built wheel and run import smoke test + run: | + wheel=$(ls dist/*.whl) + uv run --with "${wheel}" --python 3.12 --no-project \ + python -c "import zarr_http_server; print('zarr_http_server', zarr_http_server.__version__)" + + upload_pypi: + name: Upload to PyPI + needs: [build, test_artifacts] + if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/zarr_http_server-v') + runs-on: ubuntu-latest + environment: + name: zarr-http-server-releases + url: https://pypi.org/p/zarr-http-server + permissions: + id-token: write # required for OIDC trusted publishing + attestations: write # required for artifact attestations + steps: + - uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c # v8.0.1 + with: + name: zarr-http-server-dist + path: dist + + - name: Generate artifact attestation + uses: actions/attest@f7c74d28b9d84cb8768d0b8ca14a4bac6ef463e6 # v4.2.0 + with: + subject-path: dist/* + + - name: Publish package to PyPI + uses: pypa/gh-action-pypi-publish@cef221092ed1bacb1cc03d23a2d87d1d172e277b # v1.14.0 + + upload_testpypi: + name: Upload to TestPyPI + needs: [build, test_artifacts] + if: github.event_name == 'workflow_dispatch' + runs-on: ubuntu-latest + environment: + name: zarr-http-server-releases-test + url: https://test.pypi.org/p/zarr-http-server + permissions: + id-token: write + attestations: write + steps: + - uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c # v8.0.1 + with: + name: zarr-http-server-dist + path: dist + + - name: Generate artifact attestation + uses: actions/attest@f7c74d28b9d84cb8768d0b8ca14a4bac6ef463e6 # v4.2.0 + with: + subject-path: dist/* + + - name: Publish package to TestPyPI + uses: pypa/gh-action-pypi-publish@cef221092ed1bacb1cc03d23a2d87d1d172e277b # v1.14.0 + with: + repository-url: https://test.pypi.org/legacy/ diff --git a/.github/workflows/zarr-http-server.yml b/.github/workflows/zarr-http-server.yml new file mode 100644 index 0000000000..b0f3cc726e --- /dev/null +++ b/.github/workflows/zarr-http-server.yml @@ -0,0 +1,108 @@ +name: zarr-http-server + +on: + push: + branches: [main] + paths: + - 'packages/zarr-http-server/**' + - '.github/workflows/zarr-http-server.yml' + # The package resolves zarr from the repo root for its own tests, so a + # core change can break it. Run this suite when core changes too. + - 'src/zarr/**' + pull_request: + paths: + - 'packages/zarr-http-server/**' + - '.github/workflows/zarr-http-server.yml' + # The package resolves zarr from the repo root for its own tests, so a + # core change can break it. Run this suite when core changes too. + - 'src/zarr/**' + workflow_dispatch: + +permissions: + contents: read + +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true + +jobs: + test: + name: pytest py=${{ matrix.python-version }} + runs-on: ubuntu-latest + defaults: + run: + shell: bash + working-directory: packages/zarr-http-server + strategy: + fail-fast: false + matrix: + python-version: ['3.12', '3.13', '3.14'] + steps: + - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0 + with: + persist-credentials: false + - name: Install uv + uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2 + with: + enable-cache: true + - name: Set up Python ${{ matrix.python-version }} + run: uv python install ${{ matrix.python-version }} + - name: Sync test dependency groups + # The docs group carries the deps the README examples need, so the + # test that reads a served array back with a zarr client runs here + # instead of silently skipping. + run: uv sync --group test --group docs --python ${{ matrix.python-version }} + - name: Run pytest + run: uv run --group test --group docs pytest tests + + ruff: + name: ruff + runs-on: ubuntu-latest + defaults: + run: + shell: bash + working-directory: packages/zarr-http-server + steps: + - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0 + with: + persist-credentials: false + - name: Install uv + uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2 + - name: Run ruff + run: uvx ruff check . + + mypy: + name: mypy + runs-on: ubuntu-latest + defaults: + run: + shell: bash + working-directory: packages/zarr-http-server + steps: + - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0 + with: + persist-credentials: false + - name: Install uv + uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2 + with: + enable-cache: true + - name: Set up Python + run: uv python install 3.12 + - name: Sync test dependency group + run: uv sync --group test --python 3.12 + - name: Run mypy + run: uv run --group test --with mypy mypy src + + zarr-http-server-complete: + name: zarr-http-server complete + needs: [test, ruff, mypy] + if: always() + runs-on: ubuntu-latest + steps: + - name: Check failure + if: | + contains(needs.*.result, 'failure') || + contains(needs.*.result, 'cancelled') + run: exit 1 + - name: Success + run: echo Success! diff --git a/changes/3732.bugfix.md b/changes/3732.bugfix.md new file mode 100644 index 0000000000..728e8a7e3a --- /dev/null +++ b/changes/3732.bugfix.md @@ -0,0 +1,3 @@ +`DefaultChunkKeyEncoding.decode_chunk_key` now validates that a chunk key +starts with the configured `c` prefix and raises `ValueError` for +malformed keys, instead of silently decoding them incorrectly. diff --git a/docs/api/zarr/experimental.md b/docs/api/zarr/experimental.md index 60f1f987b5..0961db08c4 100644 --- a/docs/api/zarr/experimental.md +++ b/docs/api/zarr/experimental.md @@ -4,6 +4,6 @@ title: experimental Experimental functionality is not stable and may change or be removed at any point. -## Classes +## Cache Store ::: zarr.experimental.cache_store diff --git a/packages/zarr-http-server/CHANGELOG.md b/packages/zarr-http-server/CHANGELOG.md new file mode 100644 index 0000000000..7c4bc92cad --- /dev/null +++ b/packages/zarr-http-server/CHANGELOG.md @@ -0,0 +1,3 @@ +# Release notes + + diff --git a/packages/zarr-http-server/LICENSE.txt b/packages/zarr-http-server/LICENSE.txt new file mode 100644 index 0000000000..1e8da4d242 --- /dev/null +++ b/packages/zarr-http-server/LICENSE.txt @@ -0,0 +1,21 @@ +The MIT License (MIT) + +Copyright (c) 2015-2025 Zarr Developers + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. diff --git a/packages/zarr-http-server/README.md b/packages/zarr-http-server/README.md new file mode 100644 index 0000000000..3ff69ac3be --- /dev/null +++ b/packages/zarr-http-server/README.md @@ -0,0 +1,192 @@ +# zarr-http-server + +HTTP server for Zarr stores, arrays, and groups. + +`zarr-http-server` exposes a Zarr `Store`, `Array`, or `Group` over HTTP via an +ASGI app, so any HTTP-capable client (including zarr-python itself, via +`FsspecStore` or `ObjectStore`) can read the data. The app is built on +[Starlette](https://www.starlette.io/) and can be run with any ASGI server; +`serve_store`/`serve_node` conveniences run it with +[Uvicorn](https://www.uvicorn.org/). + +## Installation + +```bash +pip install zarr-http-server +``` + +### Building an ASGI App + +`store_app` creates an ASGI app that exposes every key +in a store. Only point it at a store whose full contents are safe to serve +publicly — it grants read (and, if `PUT` is enabled, write) access to +everything the store contains, with no per-key filtering: + +```python +import zarr +from zarr_http_server import store_app + +store = zarr.storage.MemoryStore() +zarr.create_array(store, shape=(100, 100), chunks=(10, 10), dtype="float64") + +app = store_app(store) + +# Run with any ASGI server, e.g. Uvicorn: +# uvicorn my_module:app --host 0.0.0.0 --port 8000 +``` + +`node_app` creates an ASGI app that only serves keys +belonging to a specific `Array` or `Group`. Requests for keys outside the node +receive a 404, even if those keys exist in the underlying store: + +```python +import zarr +from zarr_http_server import node_app + +store = zarr.storage.MemoryStore() +root = zarr.open_group(store) +root.create_array("a", shape=(10,), dtype="int32") +root.create_array("b", shape=(20,), dtype="float64") + +# Only serve the array at "a" — requests for "b" will return 404. +arr = root["a"] +app = node_app(arr) +``` + +### Running the Server + +`serve_store` and `serve_node` +build an ASGI app *and* start a [Uvicorn](https://www.uvicorn.org/) server. +By default they block until the server is shut down: + +```python +from zarr_http_server import serve_store + +serve_store(store, host="127.0.0.1", port=8000) +``` + +Pass `background=True` to start the server in a daemon thread and return +immediately. The returned `BackgroundServer` +can be used as a context manager for automatic shutdown: + +The example below also *reads back* over HTTP, which is a client-side +concern: `zarr.open_array(server.url)` goes through `FsspecStore`, which needs +an HTTP-capable fsspec that `zarr-http-server` does not pull in. + +```bash +pip install "fsspec[http]" +``` + + +```python +import numpy as np + +import zarr +from zarr_http_server import serve_node +from zarr.storage import MemoryStore + +store = MemoryStore() +arr = zarr.create_array(store, shape=(100,), chunks=(10,), dtype="float64") +arr[:] = np.arange(100, dtype="float64") + +with serve_node(arr, host="127.0.0.1", port=8000, background=True) as server: + # Now open the served array from another zarr client. + remote = zarr.open_array(server.url, mode="r") + np.testing.assert_array_equal(remote[:], arr[:]) +# Server is shut down automatically when the block exits. +``` + +### CORS Support + +Both `store_app` and `node_app` (and their `serve_*` counterparts) accept a +`CorsOptions` parameter to enable +[CORS](https://developer.mozilla.org/en-US/docs/Web/HTTP/CORS) middleware for +browser-based clients: + +```python +from zarr_http_server import CorsOptions, store_app + +app = store_app( + store, + cors_options=CorsOptions( + allow_origins=["*"], + allow_methods=["GET"], + ), +) +``` + +### HTTP Range Requests + +The server supports the standard `Range` header for partial reads. The three +forms defined by [RFC 7233](https://httpwg.org/specs/rfc7233.html) are supported: + +| Header | Meaning | +| -------------------- | ------------------------------ | +| `bytes=0-99` | First 100 bytes | +| `bytes=100-` | Everything from byte 100 | +| `bytes=-50` | Last 50 bytes | + +A successful range request returns HTTP 206 (Partial Content) with a +`Content-Range` header. A range that cannot be satisfied -- one lying wholly +beyond the end of the object, or an inverted one such as `bytes=5-2` -- +returns 416 (Range Not Satisfiable). + +### Write Support + +By default only `GET` requests are accepted. To enable writes, pass +`methods={"GET", "PUT"}`: + +```python +app = store_app(store, methods={"GET", "PUT"}) +``` + +Accepted methods are `GET`, `HEAD`, and `PUT`; anything else raises +`ValueError` when the app is built, since the handler has no behavior for it. + +A `PUT` request stores the request body at the given path and returns 204 (No +Content). Bodies are capped at `DEFAULT_MAX_BODY_SIZE` (256 MiB) and a larger +one returns 413 (Content Too Large) -- `Store.set` takes a whole buffer, so an +accepted body is held in memory in full. Raise or remove the cap with +`max_body_size`: + +```python +from zarr_http_server import DEFAULT_MAX_BODY_SIZE, store_app + +app = store_app(store, methods={"GET", "PUT"}, max_body_size=None) +``` + +Note that `store_app` exposes every key in the store, so `PUT` grants +unrestricted write access to all of it. `node_app` confines writes to keys +belonging to the node -- though a client that can write a node's metadata can +change what that node contains, and so what it will serve. + +### Shutting Down + +`BackgroundServer.shutdown()` (and leaving the `with` block) waits up to +`shutdown_timeout` seconds -- 5 by default -- for in-flight requests to finish +before forcing the server closed: + +```python +with serve_node(arr, background=True, shutdown_timeout=30) as server: + ... +``` + +## Example + +`examples/serve.py` creates an in-memory Zarr array, serves it over HTTP with +`serve_node`, and fetches the `zarr.json` metadata document and a raw chunk +using `httpx`. + +Running it with uv is the simplest route — the script declares its own +dependencies inline, so uv installs them for you: + +```bash +uv run examples/serve.py +``` + +To run it with a plain interpreter, install its `httpx` dependency first: + +```bash +pip install httpx +python examples/serve.py +``` diff --git a/packages/zarr-http-server/changes/3732.feature.md b/packages/zarr-http-server/changes/3732.feature.md new file mode 100644 index 0000000000..accd91ab81 --- /dev/null +++ b/packages/zarr-http-server/changes/3732.feature.md @@ -0,0 +1,3 @@ +Initial release of `zarr-http-server`: an HTTP server exposing Zarr stores, +arrays, and groups over an ASGI app, extracted from the +`zarr.experimental.serve` prototype in zarr-python. diff --git a/packages/zarr-http-server/changes/README.md b/packages/zarr-http-server/changes/README.md new file mode 100644 index 0000000000..80f0be782c --- /dev/null +++ b/packages/zarr-http-server/changes/README.md @@ -0,0 +1,25 @@ +Writing a changelog entry for `zarr-http-server` +--------------------------------------------- + +Fragments in **this** directory are released notes for the `zarr-http-server` +package only — kept separate from the parent zarr-python `changes/` +directory so a PR touching only `packages/zarr-http-server/` produces a +release note for this package only. + +Please put a new file in this directory named `xxxx..md`, where + +- `xxxx` is the pull request number associated with this entry +- `` is one of: + - feature + - bugfix + - doc + - removal + - misc + +Inside the file, please write a short description of what you have +changed, and how it impacts users of `zarr-http-server`. + +A `zarr-http-server` release runs `towncrier build` in `packages/zarr-http-server/`, +which consumes the fragments here and updates `CHANGELOG.md`. Fragments +that describe parent zarr-python changes (not the server package) +belong in the top-level `changes/` directory, not here. diff --git a/packages/zarr-http-server/examples/serve.py b/packages/zarr-http-server/examples/serve.py new file mode 100644 index 0000000000..082464f646 --- /dev/null +++ b/packages/zarr-http-server/examples/serve.py @@ -0,0 +1,43 @@ +# /// script +# requires-python = ">=3.12" +# dependencies = [ +# "zarr-http-server @ git+https://github.com/zarr-developers/zarr-python.git@main#subdirectory=packages/zarr-http-server", +# "httpx", +# ] +# /// +""" +Serve a Zarr array over HTTP and fetch its metadata and chunks. + +This example creates an in-memory array, serves it in a background thread, +then uses ``httpx`` to request the ``zarr.json`` metadata document and a raw +chunk. +""" + +import json + +import httpx +import numpy as np +import zarr +from zarr.storage import MemoryStore + +from zarr_http_server import serve_node + +# -- create an array -------------------------------------------------------- +store = MemoryStore() +data = np.arange(1000, dtype="uint8").reshape(10, 10, 10) +# no compression +arr = zarr.create_array(store, data=data, chunks=(5, 5, 5), write_data=True, compressors=None) + +# -- serve it in the background --------------------------------------------- +with serve_node(arr, host="127.0.0.1", port=8000, background=True) as server: + # -- fetch metadata ------------------------------------------------------ + resp = httpx.get(f"{server.url}/zarr.json") + assert resp.status_code == 200 + meta = resp.json() + print("zarr.json:") + print(json.dumps(meta, indent=2)) + + # -- fetch a raw chunk --------------------------------------------------- + resp = httpx.get(f"{server.url}/c/0/0/0") + assert resp.status_code == 200 + print(f"\nchunk c/0/0/0: {len(resp.content)} bytes") diff --git a/packages/zarr-http-server/pyproject.toml b/packages/zarr-http-server/pyproject.toml new file mode 100644 index 0000000000..33adcf74aa --- /dev/null +++ b/packages/zarr-http-server/pyproject.toml @@ -0,0 +1,120 @@ +[build-system] +requires = ["hatchling>=1.29.0", "hatch-vcs"] +build-backend = "hatchling.build" + +[project] +name = "zarr-http-server" +dynamic = ["version"] +description = "HTTP server for Zarr stores, arrays, and groups." +readme = "README.md" +requires-python = ">=3.12" +license = "MIT" +license-files = ["LICENSE.txt"] +authors = [ + { name = "Davis Bennett", email = "davis.v.bennett@gmail.com" }, +] +classifiers = [ + "Development Status :: 4 - Beta", + "Intended Audience :: Developers", + "Intended Audience :: Information Technology", + "Intended Audience :: Science/Research", + "License :: OSI Approved :: MIT License", + "Operating System :: OS Independent", + "Programming Language :: Python", + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3.13", + "Programming Language :: Python :: 3.14", + "Topic :: Scientific/Engineering", + "Topic :: Internet :: WWW/HTTP :: HTTP Servers", + "Typing :: Typed", +] +keywords = ["zarr", "http", "server", "asgi"] +dependencies = [ + "zarr>=3.1", + "starlette>=1.0", + "uvicorn>=0.29", +] + +[project.urls] +Homepage = "https://github.com/zarr-developers/zarr-python" +Source = "https://github.com/zarr-developers/zarr-python/tree/main/packages/zarr-http-server" +Issues = "https://github.com/zarr-developers/zarr-python/issues" +Changelog = "https://github.com/zarr-developers/zarr-python/blob/main/packages/zarr-http-server/CHANGELOG.md" +Documentation = "https://github.com/zarr-developers/zarr-python/blob/main/packages/zarr-http-server/README.md" + +[dependency-groups] +test = ["pytest", "httpx", "httpx2"] +docs = [ + # Optional dependencies to run the README examples. Reading a served + # array back with `zarr.open_array(url)` goes through FsspecStore, which + # needs an HTTP-capable fsspec; `examples/serve.py` uses httpx. + "fsspec[http]", + "httpx", +] + +# Dev-only: resolve zarr from the repo root so package tests run against +# in-repo zarr. Affects uv resolution only, not published metadata. +[tool.uv.sources] +zarr = { path = "../..", editable = true } + +[tool.hatch.version] +source = "vcs" +tag-pattern = '^zarr_http_server-v(?P.+)$' +# `git_describe_command` ensures we get the zarr_http_server tags instead of latest. +# `local_scheme` strips the git commit info so the appending info is just a counter from latest tag. +# test-pypi doesn't accept git commit info in tags, and the count should be enough to distinguish unique runs. +raw-options = { root = "../..", git_describe_command = "git describe --dirty --tags --long --match zarr_http_server-v*", local_scheme = "no-local-version" } + +[tool.hatch.build.targets.wheel] +packages = ["src/zarr_http_server"] + +[tool.ruff] +extend = "../../pyproject.toml" +target-version = "py312" + +[tool.pytest.ini_options] +minversion = "7" +testpaths = ["tests"] +xfail_strict = true +addopts = ["-ra", "--strict-config", "--strict-markers"] +filterwarnings = [ + "error", +] + +[tool.mypy] +files = ["src"] +python_version = "3.12" +ignore_missing_imports = true +namespace_packages = false +pretty = true +show_error_code_links = true +show_error_context = true +strict = true +warn_unreachable = true +enable_error_code = ["ignore-without-code", "redundant-expr", "truthy-bool", "truthy-iterable"] + +[tool.numpydoc_validation] +# Mirrors the root zarr-python config so moved docstrings (written for that +# config) don't trip stricter defaults just because this package has its own +# pyproject.toml. See https://numpydoc.readthedocs.io/en/latest/validation.html#built-in-validation-checks +checks = [ + "GL10", + "SS04", + "PR02", + "PR03", + "PR05", + "PR06", +] + +[tool.towncrier] +# Fragments for this package live alongside the package source, separate +# from the parent zarr-python `changes/` directory, so a PR touching only +# `packages/zarr-http-server/` produces a release note for this package only. +directory = "changes" +filename = "CHANGELOG.md" +package = "zarr_http_server" +underlines = ["", "", ""] +title_format = "## {version} ({project_date})" +issue_format = "[#{issue}](https://github.com/zarr-developers/zarr-python/issues/{issue})" +start_string = "\n" diff --git a/packages/zarr-http-server/src/zarr_http_server/__init__.py b/packages/zarr-http-server/src/zarr_http_server/__init__.py new file mode 100644 index 0000000000..5a0237e9e2 --- /dev/null +++ b/packages/zarr-http-server/src/zarr_http_server/__init__.py @@ -0,0 +1,28 @@ +"""Zarr-http-server: HTTP server for Zarr stores, arrays, and groups.""" + +from importlib.metadata import version + +from zarr_http_server._serve import ( + DEFAULT_MAX_BODY_SIZE, + BackgroundServer, + CorsOptions, + HTTPMethod, + node_app, + serve_node, + serve_store, + store_app, +) + +__version__ = version("zarr-http-server") + +__all__ = [ + "DEFAULT_MAX_BODY_SIZE", + "BackgroundServer", + "CorsOptions", + "HTTPMethod", + "__version__", + "node_app", + "serve_node", + "serve_store", + "store_app", +] diff --git a/packages/zarr-http-server/src/zarr_http_server/_keys.py b/packages/zarr-http-server/src/zarr_http_server/_keys.py new file mode 100644 index 0000000000..6a6559abbd --- /dev/null +++ b/packages/zarr-http-server/src/zarr_http_server/_keys.py @@ -0,0 +1,215 @@ +"""Utilities for determining the set of valid store keys for zarr nodes. + +A zarr node (array or group) implicitly defines a subset of keys in the +underlying store. For an **array** the valid keys are: + +* metadata documents (``zarr.json`` for v3, ``.zarray`` / ``.zattrs`` for v2) +* chunk (or shard) keys whose decoded coordinates fall within the storage grid + +For a **group** the valid keys are: + +* its own metadata documents +* any path ``/`` where ```` is a direct member and + ```` is recursively valid for that child +""" + +from __future__ import annotations + +from typing import TYPE_CHECKING, Any + +ZARR_JSON = "zarr.json" +ZARRAY_JSON = ".zarray" +ZGROUP_JSON = ".zgroup" +ZATTRS_JSON = ".zattrs" +ZMETADATA_V2_JSON = ".zmetadata" + +if TYPE_CHECKING: + from zarr import Array, Group + +_ARRAY_METADATA_KEYS_V3 = frozenset({ZARR_JSON}) +_ARRAY_METADATA_KEYS_V2 = frozenset({ZARRAY_JSON, ZATTRS_JSON}) +_GROUP_METADATA_KEYS_V3 = frozenset({ZARR_JSON}) +_GROUP_METADATA_KEYS_V2 = frozenset({ZGROUP_JSON, ZATTRS_JSON, ZMETADATA_V2_JSON}) + + +def array_metadata_keys(zarr_format: int) -> frozenset[str]: + """Return the metadata key basenames an array owns, for a zarr format. + + Parameters + ---------- + zarr_format : int + The zarr format version (2 or 3). + + Returns + ------- + frozenset of str + """ + if zarr_format == 3: + return _ARRAY_METADATA_KEYS_V3 + return _ARRAY_METADATA_KEYS_V2 + + +def group_metadata_keys(zarr_format: int) -> frozenset[str]: + """Return the metadata key basenames a group owns, for a zarr format. + + Parameters + ---------- + zarr_format : int + The zarr format version (2 or 3). + + Returns + ------- + frozenset of str + """ + if zarr_format == 3: + return _GROUP_METADATA_KEYS_V3 + return _GROUP_METADATA_KEYS_V2 + + +def decode_chunk_key(array: Array[Any], key: str) -> tuple[int, ...] | None: + """Try to decode *key* into chunk coordinates for *array*. + + Parameters + ---------- + array : Array + The array whose chunk key encoding should be used. + key : str + The candidate chunk key string. + + Returns + ------- + tuple of int, or None + The decoded coordinates, or ``None`` if *key* is not a valid chunk key. + """ + try: + if array.metadata.zarr_format == 2: + parts = key.split(array.metadata.dimension_separator) + coords = tuple(int(p) for p in parts) + # A 0-d v2 array holds its single chunk under "0", which decodes + # to a 1-tuple that no 0-d grid could match. + if len(array.shape) == 0: + return () if coords == (0,) else None + return coords + + encoding = array.metadata.chunk_key_encoding + separator = getattr(encoding, "separator", "/") + if encoding.name == "default": + # Default v3 keys have the form "c012". + prefix = "c" + separator + if key == "c": + return () + if not key.startswith(prefix): + return None + return tuple(int(p) for p in key[len(prefix) :].split(separator)) + if encoding.name == "v2": + return tuple(int(p) for p in key.split(separator)) + + # Unknown encoding — fall back to the encoding's own decode. + return encoding.decode_chunk_key(key) + except (ValueError, TypeError, NotImplementedError): + return None + + +def _shard_grid_shape(array: Array[Any]) -> tuple[int, ...]: + """Shape of the shard grid, falling back to the chunk grid when unsharded.""" + shard_shape = array.shards if array.shards is not None else array.chunks + return tuple(-(-s // c) for s, c in zip(array.shape, shard_shape, strict=True)) + + +def is_valid_chunk_key(array: Array[Any], key: str) -> bool: + """Check whether *key* is a valid chunk key for *array*. + + Tries to decode the key and checks that the resulting coordinates fall + within the storage grid (shard grid if sharding is used, chunk grid + otherwise). + + Parameters + ---------- + array : Array + The array to validate against. + key : str + The candidate chunk key string. + + Returns + ------- + bool + """ + coords = decode_chunk_key(array, key) + if coords is None: + return False + grid = _shard_grid_shape(array) + if len(coords) != len(grid): + return False + return all(0 <= c < g for c, g in zip(coords, grid, strict=True)) + + +def is_valid_array_key(array: Array[Any], key: str) -> bool: + """Check whether *key* is a valid store key for *array*. + + Valid keys are metadata documents and chunk keys. + + Parameters + ---------- + array : Array + The array to validate against. + key : str + The candidate key, relative to the array's root. + + Returns + ------- + bool + """ + if key in array_metadata_keys(array.metadata.zarr_format): + return True + return is_valid_chunk_key(array, key) + + +def is_valid_node_key(node: Array[Any] | Group, key: str) -> bool: + """Check whether *key* is a valid store key relative to *node*. + + For an ``Array``, valid keys are metadata documents and chunk keys. + + For a ``Group``, valid keys are the group's own metadata documents, or + a path of the form ``/`` where ```` is a direct + member and ```` is recursively valid for that child. + + Parameters + ---------- + node : Array or Group + The zarr node to validate against. + key : str + The candidate key, relative to the node's root. + + Returns + ------- + bool + """ + from zarr import Array + + if isinstance(node, Array): + return is_valid_array_key(node, key) + + # Group + if key in group_metadata_keys(node.metadata.zarr_format): + return True + + # Try to match the first path component against a child member. + if "/" in key: + child_name, remainder = key.split("/", 1) + else: + # A bare name with no slash can't be a valid group-level key — + # groups contain children (which have subkeys), not bare keys. + return False + + try: + child = node[child_name] + except Exception: + # A child that cannot be opened cannot vouch for the key. Beyond a + # missing name (KeyError), this covers metadata this process cannot + # parse -- unreadable JSON, or a codec supplied by a plugin the + # server does not have installed. Validating a key's *shape* never + # needs to decode data, so an unopenable child makes the key + # unverifiable, not the request an error. + return False + + return is_valid_node_key(child, remainder) diff --git a/packages/zarr-http-server/src/zarr_http_server/_serve.py b/packages/zarr-http-server/src/zarr_http_server/_serve.py new file mode 100644 index 0000000000..ab378e9084 --- /dev/null +++ b/packages/zarr-http-server/src/zarr_http_server/_serve.py @@ -0,0 +1,759 @@ +from __future__ import annotations + +import asyncio +import errno +import ntpath +import threading +import time +from typing import TYPE_CHECKING, Any, Literal, Self, TypedDict, overload + +from zarr.abc.store import OffsetByteRequest, RangeByteRequest, SuffixByteRequest +from zarr.buffer import cpu + +from zarr_http_server._keys import is_valid_node_key + +if TYPE_CHECKING: + import uvicorn + from starlette.applications import Starlette + from starlette.requests import Request + from starlette.responses import Response + from zarr import Array, Group + from zarr.abc.store import ByteRequest, Store + +__all__ = [ + "DEFAULT_MAX_BODY_SIZE", + "BackgroundServer", + "CorsOptions", + "HTTPMethod", + "node_app", + "serve_node", + "serve_store", + "store_app", +] + + +class CorsOptions(TypedDict): + allow_origins: list[str] + allow_methods: list[str] + + +HTTPMethod = Literal["GET", "PUT", "HEAD"] +"""An HTTP method this server implements. + +`GET` and `HEAD` read a key; `PUT` writes one. Other verbs are not accepted: +the handler has no behavior for them, so serving them would silently answer +as if they were `GET`. +""" + +_SUPPORTED_METHODS: frozenset[str] = frozenset({"GET", "PUT", "HEAD"}) + +DEFAULT_MAX_BODY_SIZE = 256 * 1024 * 1024 +"""Default cap on a `PUT` body, in bytes. + +`Store.set` takes a whole `Buffer`, so an accepted body is held in memory in +full; the body is read incrementally and abandoned once it passes this cap, +so one request cannot size the server's memory use. Pass +`max_body_size=None` to lift the cap and read the body whole. +""" + + +class BackgroundServer: + """A running background HTTP server that can be used as a context manager. + + Wraps a ``uvicorn.Server`` running in a daemon thread. When used as a + context manager the server is shut down automatically on exit. + + Parameters + ---------- + server : uvicorn.Server + The running uvicorn server instance. + shutdown_timeout : int, optional + Seconds to wait for in-flight requests to finish gracefully during + :meth:`shutdown` before forcing the server closed. Defaults to ``5``. + + Examples + -------- + >>> with serve_node(arr, background=True) as server: # doctest: +SKIP + ... print(f"Listening on {server.host}:{server.port}") + ... # server is shut down when the block exits + """ + + def __init__( + self, + server: uvicorn.Server, + thread: threading.Thread, + *, + host: str, + port: int, + shutdown_timeout: int = 5, + ) -> None: + self._server = server + self._thread = thread + self.host = host + self.port = port + self._shutdown_timeout = shutdown_timeout + + @property + def url(self) -> str: + """The base URL of the running server.""" + return f"http://{self.host}:{self.port}" + + def shutdown(self) -> None: + """Signal the server to shut down and wait for it to stop. + + Waits up to ``shutdown_timeout`` seconds (set when the server was + started) for the server thread to exit on its own -- uvicorn's own + graceful-shutdown wait for in-flight requests is bounded by the same + value via ``timeout_graceful_shutdown``. If the thread is still + alive after that, ``force_exit`` is set on the underlying uvicorn + server to tear it down immediately rather than block forever on a + stuck or slow in-flight request. + """ + self._server.should_exit = True + self._thread.join(timeout=self._shutdown_timeout) + if self._thread.is_alive(): + self._server.force_exit = True + # Bounded again: force_exit is observed by uvicorn's loop, so a + # request wedged outside it would otherwise block here forever. + self._thread.join(timeout=self._shutdown_timeout) + + def __enter__(self) -> Self: + return self + + def __exit__(self, *args: object) -> None: + self.shutdown() + + +def _parse_range_header(range_header: str) -> ByteRequest | None: + """Parse an HTTP Range header into a ByteRequest. + + Parameters + ---------- + range_header : str + The value of the Range header, e.g. ``"bytes=0-99"`` or ``"bytes=-100"``. + + Returns + ------- + ByteRequest or None + A ``RangeByteRequest``, ``OffsetByteRequest``, or ``SuffixByteRequest``, + or ``None`` if the header cannot be parsed. + """ + if not range_header.startswith("bytes="): + return None + range_spec = range_header[len("bytes=") :] + try: + if range_spec.startswith("-"): + # suffix request: bytes=-N + suffix = int(range_spec[1:]) + return SuffixByteRequest(suffix=suffix) + parts = range_spec.split("-", 1) + if len(parts) != 2: + return None + start_str, end_str = parts + start = int(start_str) + if end_str == "": + # offset request: bytes=N- + return OffsetByteRequest(offset=start) + # range request: bytes=N-M (HTTP end is inclusive, ByteRequest end is exclusive) + end = int(end_str) + 1 + if start >= end: + # An inverted range like "bytes=5-2" is unsatisfiable, not a read + # of negative length. + return None + return RangeByteRequest(start=start, end=end) + except ValueError: + return None + + +def _is_drive_qualified(path: str) -> bool: + """Whether *path* carries a drive or UNC prefix that would discard a store root. + + A drive-qualified key such as `C:/Windows`, or the drive-relative `a:b`, + replaces the root it is joined to rather than extending it. This is + rejected on every platform, not just Windows: the check is a string-level + gate in front of an arbitrary `Store`, and this package cannot know how a + given implementation resolves keys. + + The cost is that a node whose *first* path segment looks like `:...` + is unreachable -- `ntpath` treats any single character before a colon as + a drive, so there is no safe subset to admit. Such names are legal but + rare, and later segments are unaffected (`sub/a:b` is served normally). + + Parameters + ---------- + path : str + The candidate key, with separators already folded to `/`. + + Returns + ------- + bool + """ + return ntpath.splitdrive(path)[0] != "" + + +def _names_nothing(exc: OSError) -> bool: + """Whether an `OSError` says the key cannot name anything, not that I/O failed. + + A key longer than the filesystem permits, or containing bytes it forbids, + can never identify a stored object, so a miss is the honest answer. Every + other `errno` -- a full disk, a read-only mount, a permissions problem, a + device error -- describes a failure to complete the operation and must + surface as such. + + Parameters + ---------- + exc : OSError + The error raised by the store. + + Returns + ------- + bool + """ + return exc.errno in (errno.ENAMETOOLONG, errno.EINVAL) + + +def _content_range(byte_range: ByteRequest, length: int) -> str | None: + """Build a `Content-Range` value for a 206 response, if the offsets are known. + + Parameters + ---------- + byte_range : ByteRequest + The range that was served. + length : int + The number of bytes actually returned. + + Returns + ------- + str or None + A `bytes -/*` value, or `None` for a suffix request, + whose absolute offset cannot be known without the object's size. + """ + if isinstance(byte_range, RangeByteRequest): + start = byte_range.start + elif isinstance(byte_range, OffsetByteRequest): + start = byte_range.offset + else: + return None + # The total length is unknown here; RFC 9110 permits "*" in its place. + return f"bytes {start}-{start + length - 1}/*" + + +async def _get_response(store: Store, path: str, byte_range: ByteRequest | None = None) -> Response: + """Fetch a key from the store and return an HTTP response.""" + from starlette.responses import Response + + proto = cpu.buffer_prototype + content_type = "application/json" if path.endswith("zarr.json") else "application/octet-stream" + + try: + buf = await store.get(path, proto, byte_range=byte_range) + except MemoryError: + # A range so wide the store cannot allocate for it cannot be + # satisfied; that is the client's range, not a server fault. + return Response(status_code=416) + except OSError as exc: + if not _names_nothing(exc): + # A real I/O failure, which must not be reported as a miss. Under + # the v3 spec an absent chunk is an uninitialized one, and a + # reader is right to substitute the array's fill value for it -- + # so 404 asserts something about the store's contents. An + # unreadable chunk is not an uninitialized chunk, and answering + # 404 would have a correct client silently materialize fill + # values over data that exists. + raise + return Response(status_code=404) + if buf is None: + return Response(status_code=404) + + if byte_range is None: + return Response(content=buf.to_bytes(), status_code=200, media_type=content_type) + + body = buf.to_bytes() + if len(body) == 0: + # The range lies wholly beyond the end of the object. + return Response(status_code=416) + + content_range = _content_range(byte_range, len(body)) + headers = {"Content-Range": content_range} if content_range is not None else None + return Response(content=body, status_code=206, media_type=content_type, headers=headers) + + +async def _handle_request(request: Request) -> Response: + """Handle a request, optionally filtering by node validity.""" + from starlette.responses import Response + + store: Store = request.app.state.store + node: Array[Any] | Group | None = request.app.state.node + prefix: str = request.app.state.prefix + path = request.path_params.get("path", "") + + # Reject non-canonical / traversal-prone keys before touching the store. + # Starlette percent-decodes path params, so "..%2f" arrives as a literal + # ".." segment and "%2f"-encoded leading slashes arrive as an empty leading + # segment (making the key absolute, which escapes a filesystem store root). + # Backslashes are separators on Windows and drive-qualified or + # root-relative keys discard a filesystem store's root entirely, so fold + # separators before checking segments -- mirroring zarr's normalize_path + # (src/zarr/storage/_utils.py) plus a drive check it doesn't need. Legitimate + # zarr keys never contain empty, ".", or ".." segments, or a drive letter. + segments = path.replace("\\", "/").split("/") + if any(segment in ("", ".", "..") for segment in segments) or _is_drive_qualified(path): + return Response(status_code=404) + + # A NUL can never appear in a store key, and reaches the filesystem layer + # as a raised error rather than a miss. Rejecting it here keeps that out + # of the store, so the store's own errors always mean real I/O trouble. + if "\x00" in path: + return Response(status_code=404) + + # If serving a node, validate the key before touching the store. Group + # validation opens children through zarr's synchronous API, which drives + # the store to completion and would otherwise block the event loop for + # the duration -- serializing every concurrent request behind it, and + # outlasting the shutdown timeout. + if node is not None and not await asyncio.to_thread(is_valid_node_key, node, path): + return Response(status_code=404) + + # Resolve the full store key by prepending the node's prefix. + store_key = f"{prefix}/{path}" if prefix else path + + if request.method == "PUT": + max_body_size: int | None = request.app.state.max_body_size + if max_body_size is None: + body = await request.body() + else: + declared = request.headers.get("content-length") + if declared is not None and declared.isdigit() and int(declared) > max_body_size: + return Response(status_code=413) + + # Read incrementally and stop at the cap. `request.body()` would + # buffer the whole body first, which a chunked request can use to + # exceed the cap by any amount before it is ever checked. + chunks: list[bytes] = [] + received = 0 + async for chunk in request.stream(): + received += len(chunk) + if received > max_body_size: + return Response(status_code=413) + chunks.append(chunk) + body = b"".join(chunks) + + buf = cpu.buffer_prototype.buffer.from_bytes(body) + try: + await store.set(store_key, buf) + except OSError as exc: + if not _names_nothing(exc): + # A real write failure -- a full disk, a read-only mount, a + # permissions problem. Reporting it as 404 would tell the + # client the write is pointless rather than failed. + raise + return Response(status_code=404) + return Response(status_code=204) + + range_header = request.headers.get("range") + byte_range: ByteRequest | None = None + if range_header is not None: + byte_range = _parse_range_header(range_header) + if byte_range is None: + return Response(status_code=416) + + return await _get_response(store, store_key, byte_range) + + +def _make_starlette_app( + *, + methods: set[HTTPMethod] | None = None, + cors_options: CorsOptions | None = None, +) -> Starlette: + """Create a Starlette app with the request handler. + + Raises + ------ + ValueError + If `methods` contains anything outside `GET`, `PUT`, and `HEAD`. + """ + from starlette.applications import Starlette + from starlette.middleware.cors import CORSMiddleware + from starlette.routing import Route + + if methods is None: + methods = {"GET"} + + # An empty set must not reach Starlette: `Route` treats a falsy `methods` + # as "match every method", so asking for no methods would serve them all. + if not methods: + raise ValueError( + "methods must name at least one HTTP method; " + f"accepted methods are {', '.join(sorted(_SUPPORTED_METHODS))}." + ) + + unsupported = sorted(set(methods) - _SUPPORTED_METHODS) + if unsupported: + raise ValueError( + f"Unsupported HTTP method(s): {', '.join(unsupported)}. " + f"Accepted methods are {', '.join(sorted(_SUPPORTED_METHODS))}." + ) + + app = Starlette( + routes=[Route("/{path:path}", _handle_request, methods=list(methods))], + ) + + if cors_options is not None: + app.add_middleware( + CORSMiddleware, + allow_origins=cors_options["allow_origins"], + allow_methods=cors_options["allow_methods"], + ) + return app + + +def _start_server( + app: Starlette, + *, + host: str, + port: int, + background: bool, + shutdown_timeout: int = 5, +) -> BackgroundServer | None: + """Create a uvicorn server for *app* and either block or run in a daemon thread. + + ``shutdown_timeout`` bounds uvicorn's own graceful-shutdown wait for + in-flight requests (``timeout_graceful_shutdown``), and, for a + background server, is also the bound :meth:`BackgroundServer.shutdown` + uses before forcing the server thread closed. + """ + import uvicorn + + config = uvicorn.Config(app, host=host, port=port, timeout_graceful_shutdown=shutdown_timeout) + server = uvicorn.Server(config) + + if not background: + server.run() + return None + + # uvicorn skips signal-handler installation off the main thread + # (Server.capture_signals), so no workaround is needed here. + thread = threading.Thread(target=server.run, daemon=True) + thread.start() + + deadline = time.monotonic() + 5.0 + while not server.started: + if not thread.is_alive(): + # uvicorn logs the underlying error and calls sys.exit, which in a + # thread ends it without surfacing anything to the caller. The + # overwhelmingly common cause is a port already in use. + raise RuntimeError( + f"Server thread exited before startup completed; {host}:{port} " + "may already be in use. See the server log for the cause." + ) + if time.monotonic() > deadline: + raise RuntimeError("Server failed to start within 5 seconds") + time.sleep(0.01) + + # Report the port the socket actually bound rather than the one asked for, + # so `port=0` ("pick a free port") yields a usable `url`. + bound_port = port + for bound in server.servers: + for sock in bound.sockets: + bound_port = int(sock.getsockname()[1]) + break + break + + return BackgroundServer( + server, thread, host=host, port=bound_port, shutdown_timeout=shutdown_timeout + ) + + +def store_app( + store: Store, + *, + methods: set[HTTPMethod] | None = None, + cors_options: CorsOptions | None = None, + max_body_size: int | None = DEFAULT_MAX_BODY_SIZE, +) -> Starlette: + """Create a Starlette ASGI app that serves every key in a zarr ``Store``. + + Parameters + ---------- + store : Store + The zarr store to serve. + methods : set of HTTPMethod, optional + The HTTP methods to accept: any of `"GET"`, `"HEAD"`, and `"PUT"`. + Defaults to `{"GET"}`. Passing any other method raises `ValueError`. + cors_options : CorsOptions, optional + If provided, CORS middleware will be added with the given options. + max_body_size : int or None, optional + Largest `PUT` body to accept, in bytes; larger requests get a 413. + `Store.set` takes a whole `Buffer`, so bodies cannot be streamed and + are held in memory in full. Defaults to `DEFAULT_MAX_BODY_SIZE`; + pass `None` to lift the cap. + + Returns + ------- + Starlette + An ASGI application. + """ + app = _make_starlette_app(methods=methods, cors_options=cors_options) + app.state.store = store + app.state.node = None + app.state.prefix = "" + app.state.max_body_size = max_body_size + return app + + +def node_app( + node: Array[Any] | Group, + *, + methods: set[HTTPMethod] | None = None, + cors_options: CorsOptions | None = None, + max_body_size: int | None = DEFAULT_MAX_BODY_SIZE, +) -> Starlette: + """Create a Starlette ASGI app that serves only the keys belonging to a + zarr ``Array`` or ``Group``. + + For an ``Array``, the served keys are the metadata document(s) and all + chunk (or shard) keys whose coordinates fall within the array's grid. + + For a ``Group``, the served keys are the group's own metadata plus any + path that resolves through the group's members to a valid array metadata + document or chunk key. + + Requests for keys outside this set receive a 404 response, even if the + underlying store contains data at that path. + + Parameters + ---------- + node : Array or Group + The zarr array or group to serve. + methods : set of HTTPMethod, optional + The HTTP methods to accept: any of `"GET"`, `"HEAD"`, and `"PUT"`. + Defaults to `{"GET"}`. Passing any other method raises `ValueError`. + cors_options : CorsOptions, optional + If provided, CORS middleware will be added with the given options. + max_body_size : int or None, optional + Largest `PUT` body to accept, in bytes; larger requests get a 413. + `Store.set` takes a whole `Buffer`, so bodies cannot be streamed and + are held in memory in full. Defaults to `DEFAULT_MAX_BODY_SIZE`; + pass `None` to lift the cap. + + Returns + ------- + Starlette + An ASGI application. + """ + app = _make_starlette_app(methods=methods, cors_options=cors_options) + app.state.store = node.store_path.store + app.state.node = node + app.state.prefix = node.store_path.path + app.state.max_body_size = max_body_size + return app + + +@overload +def serve_store( + store: Store, + *, + host: str = ..., + port: int = ..., + methods: set[HTTPMethod] | None = ..., + cors_options: CorsOptions | None = ..., + max_body_size: int | None = ..., + background: Literal[False] = ..., + shutdown_timeout: int = ..., +) -> None: ... + + +@overload +def serve_store( + store: Store, + *, + host: str = ..., + port: int = ..., + methods: set[HTTPMethod] | None = ..., + cors_options: CorsOptions | None = ..., + max_body_size: int | None = ..., + background: Literal[True], + shutdown_timeout: int = ..., +) -> BackgroundServer: ... + + +@overload +def serve_store( + store: Store, + *, + host: str = ..., + port: int = ..., + methods: set[HTTPMethod] | None = ..., + cors_options: CorsOptions | None = ..., + max_body_size: int | None = ..., + background: bool, + shutdown_timeout: int = ..., +) -> BackgroundServer | None: ... + + +def serve_store( + store: Store, + *, + host: str = "127.0.0.1", + port: int = 8000, + methods: set[HTTPMethod] | None = None, + cors_options: CorsOptions | None = None, + max_body_size: int | None = DEFAULT_MAX_BODY_SIZE, + background: bool = False, + shutdown_timeout: int = 5, +) -> BackgroundServer | None: + """Serve every key in a zarr ``Store`` over HTTP. + + Builds a Starlette ASGI app (see :func:`store_app`) and starts a + `Uvicorn `_ server. + + Parameters + ---------- + store : Store + The zarr store to serve. + host : str, optional + The host to bind to. Defaults to ``"127.0.0.1"``. + port : int, optional + The port to bind to. Defaults to ``8000``. + methods : set of HTTPMethod, optional + The HTTP methods to accept: any of `"GET"`, `"HEAD"`, and `"PUT"`. + Defaults to `{"GET"}`. Passing any other method raises `ValueError`. + cors_options : CorsOptions, optional + If provided, CORS middleware will be added with the given options. + max_body_size : int or None, optional + Largest `PUT` body to accept, in bytes; larger requests get a 413. + `Store.set` takes a whole `Buffer`, so bodies cannot be streamed and + are held in memory in full. Defaults to `DEFAULT_MAX_BODY_SIZE`; + pass `None` to lift the cap. + background : bool, optional + If ``False`` (the default), the server blocks until shut down. + If ``True``, the server runs in a daemon thread and this function + returns immediately. + shutdown_timeout : int, optional + Seconds to wait for in-flight requests to finish gracefully before + the server is forced closed, whether on `BackgroundServer.shutdown` + or (for a blocking server) on receiving a shutdown signal. Defaults + to ``5``. + + Returns + ------- + BackgroundServer or None + The running server when ``background=True``, or ``None`` when + the server has been shut down after blocking. The + ``BackgroundServer`` can be used as a context manager for + automatic shutdown. + """ + app = store_app(store, methods=methods, cors_options=cors_options, max_body_size=max_body_size) + return _start_server( + app, host=host, port=port, background=background, shutdown_timeout=shutdown_timeout + ) + + +@overload +def serve_node( + node: Array[Any] | Group, + *, + host: str = ..., + port: int = ..., + methods: set[HTTPMethod] | None = ..., + cors_options: CorsOptions | None = ..., + max_body_size: int | None = ..., + background: Literal[False] = ..., + shutdown_timeout: int = ..., +) -> None: ... + + +@overload +def serve_node( + node: Array[Any] | Group, + *, + host: str = ..., + port: int = ..., + methods: set[HTTPMethod] | None = ..., + cors_options: CorsOptions | None = ..., + max_body_size: int | None = ..., + background: Literal[True], + shutdown_timeout: int = ..., +) -> BackgroundServer: ... + + +@overload +def serve_node( + node: Array[Any] | Group, + *, + host: str = ..., + port: int = ..., + methods: set[HTTPMethod] | None = ..., + cors_options: CorsOptions | None = ..., + max_body_size: int | None = ..., + background: bool, + shutdown_timeout: int = ..., +) -> BackgroundServer | None: ... + + +def serve_node( + node: Array[Any] | Group, + *, + host: str = "127.0.0.1", + port: int = 8000, + methods: set[HTTPMethod] | None = None, + cors_options: CorsOptions | None = None, + max_body_size: int | None = DEFAULT_MAX_BODY_SIZE, + background: bool = False, + shutdown_timeout: int = 5, +) -> BackgroundServer | None: + """Serve only the keys belonging to a zarr ``Array`` or ``Group`` over HTTP. + + Builds a Starlette ASGI app (see :func:`node_app`) and starts a + `Uvicorn `_ server. + + For an ``Array``, the served keys are the metadata document(s) and all + chunk (or shard) keys whose coordinates fall within the array's grid. + + For a ``Group``, the served keys are the group's own metadata plus any + path that resolves through the group's members to a valid array metadata + document or chunk key. + + Requests for keys outside this set receive a 404 response, even if the + underlying store contains data at that path. + + Parameters + ---------- + node : Array or Group + The zarr array or group to serve. + host : str, optional + The host to bind to. Defaults to ``"127.0.0.1"``. + port : int, optional + The port to bind to. Defaults to ``8000``. + methods : set of HTTPMethod, optional + The HTTP methods to accept: any of `"GET"`, `"HEAD"`, and `"PUT"`. + Defaults to `{"GET"}`. Passing any other method raises `ValueError`. + cors_options : CorsOptions, optional + If provided, CORS middleware will be added with the given options. + max_body_size : int or None, optional + Largest `PUT` body to accept, in bytes; larger requests get a 413. + `Store.set` takes a whole `Buffer`, so bodies cannot be streamed and + are held in memory in full. Defaults to `DEFAULT_MAX_BODY_SIZE`; + pass `None` to lift the cap. + background : bool, optional + If ``False`` (the default), the server blocks until shut down. + If ``True``, the server runs in a daemon thread and this function + returns immediately. + shutdown_timeout : int, optional + Seconds to wait for in-flight requests to finish gracefully before + the server is forced closed, whether on `BackgroundServer.shutdown` + or (for a blocking server) on receiving a shutdown signal. Defaults + to ``5``. + + Returns + ------- + BackgroundServer or None + The running server when ``background=True``, or ``None`` when + the server has been shut down after blocking. The + ``BackgroundServer`` can be used as a context manager for + automatic shutdown. + """ + app = node_app(node, methods=methods, cors_options=cors_options, max_body_size=max_body_size) + return _start_server( + app, host=host, port=port, background=background, shutdown_timeout=shutdown_timeout + ) diff --git a/packages/zarr-http-server/src/zarr_http_server/py.typed b/packages/zarr-http-server/src/zarr_http_server/py.typed new file mode 100644 index 0000000000..e69de29bb2 diff --git a/packages/zarr-http-server/tests/conftest.py b/packages/zarr-http-server/tests/conftest.py new file mode 100644 index 0000000000..84694b42ba --- /dev/null +++ b/packages/zarr-http-server/tests/conftest.py @@ -0,0 +1,30 @@ +from __future__ import annotations + +from typing import TYPE_CHECKING, Literal + +import pytest +from zarr.storage import MemoryStore + +if TYPE_CHECKING: + from zarr.abc.store import Store + +ZarrFormat = Literal[2, 3] + + +@pytest.fixture +def store(request: pytest.FixtureRequest) -> Store: + """Store fixture resolved via indirect parametrization.""" + if request.param != "memory": + raise ValueError(f"unsupported store param: {request.param!r}") + return MemoryStore() + + +@pytest.fixture(params=(2, 3), ids=["zarr2", "zarr3"]) +def zarr_format(request: pytest.FixtureRequest) -> ZarrFormat: + """Zarr format version fixture, parametrized over v2 and v3.""" + if request.param == 2: + return 2 + elif request.param == 3: + return 3 + msg = f"Invalid zarr format requested. Got {request.param}, expected one of (2, 3)." + raise ValueError(msg) diff --git a/packages/zarr-http-server/tests/test_serve.py b/packages/zarr-http-server/tests/test_serve.py new file mode 100644 index 0000000000..c038951c94 --- /dev/null +++ b/packages/zarr-http-server/tests/test_serve.py @@ -0,0 +1,1198 @@ +from __future__ import annotations + +import asyncio +import os +from typing import TYPE_CHECKING, Any, Literal + +import numpy as np +import pytest +import zarr +from starlette.testclient import TestClient +from zarr.buffer import cpu +from zarr.storage import LocalStore + +from zarr_http_server._serve import CorsOptions, _parse_range_header, node_app, store_app + +if TYPE_CHECKING: + import pathlib + from collections.abc import Coroutine, Iterator + + from zarr.abc.store import Store + +ZarrFormat = Literal[2, 3] + + +def sync[T](coro: Coroutine[Any, Any, T]) -> T: + """Run a store coroutine to completion (tests use MemoryStore only).""" + return asyncio.run(coro) + + +@pytest.fixture +def group_with_arrays(store: Store) -> zarr.Group: + """Create a group containing a regular array and a sharded array.""" + root = zarr.open_group(store, mode="w") + zarr.create_array(root.store_path / "regular", shape=(4, 4), chunks=(2, 2), dtype="f8") + zarr.create_array( + root.store_path / "sharded", + shape=(8, 8), + chunks=(2, 2), + shards=(4, 4), + dtype="i4", + ) + return root + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestNodeAppDoesNotExposeNonZarrKeys: + """node_app must never expose keys that are not part of the zarr hierarchy.""" + + def test_non_zarr_key_returns_404(self, store: Store, group_with_arrays: zarr.Group) -> None: + """A key that is not valid zarr metadata or a valid chunk key should return 404, + even if the underlying store contains data at that path.""" + non_zarr_buf = cpu.buffer_prototype.buffer.from_bytes(b"secret data") + sync(store.set("secret.txt", non_zarr_buf)) + + app = node_app(group_with_arrays) + client = TestClient(app) + + # The non-zarr key must not be accessible. + response = client.get("/secret.txt") + assert response.status_code == 404 + + def test_non_zarr_key_nested_returns_404( + self, store: Store, group_with_arrays: zarr.Group + ) -> None: + """A non-zarr key nested under a real array's path should return 404, + even though the path prefix matches a valid zarr node.""" + non_zarr_buf = cpu.buffer_prototype.buffer.from_bytes(b"not a chunk") + sync(store.set("regular/notes.txt", non_zarr_buf)) + + app = node_app(group_with_arrays) + client = TestClient(app) + + response = client.get("/regular/notes.txt") + assert response.status_code == 404 + + def test_valid_metadata_is_accessible(self, group_with_arrays: zarr.Group) -> None: + """Zarr metadata keys (zarr.json) for both the root group and child arrays + should be served with a 200 status.""" + app = node_app(group_with_arrays) + client = TestClient(app) + + # Root group metadata + response = client.get("/zarr.json") + assert response.status_code == 200 + + # Array metadata + response = client.get("/regular/zarr.json") + assert response.status_code == 200 + + def test_valid_chunk_is_accessible(self, group_with_arrays: zarr.Group) -> None: + """A valid, in-bounds chunk key for an array with written data should + be served with a 200 status.""" + arr = group_with_arrays["regular"] + assert isinstance(arr, zarr.Array) + arr[:] = np.ones((4, 4)) + + app = node_app(group_with_arrays) + client = TestClient(app) + + # c/0/0 is a valid chunk key for a (4,4) array with (2,2) chunks. + response = client.get("/regular/c/0/0") + assert response.status_code == 200 + + def test_out_of_bounds_chunk_key_returns_404( + self, store: Store, group_with_arrays: zarr.Group + ) -> None: + """A chunk key that is syntactically valid but references indices beyond + the array's chunk grid should return 404.""" + arr = group_with_arrays["regular"] + assert isinstance(arr, zarr.Array) + arr[:] = np.ones((4, 4)) + + # Put real data at the out-of-grid key, so that a 404 can only come + # from the bounds check -- not from the key merely being absent. + planted = cpu.buffer_prototype.buffer.from_bytes(b"out of grid") + sync(store.set("regular/c/99/99", planted)) + assert sync(store.get("regular/c/99/99", cpu.buffer_prototype)) is not None + + app = node_app(group_with_arrays) + client = TestClient(app) + + # (4,4) array with (2,2) chunks has grid shape (2,2), so c/99/99 is + # syntactically valid but out of bounds. + response = client.get("/regular/c/99/99") + assert response.status_code == 404 + + def test_empty_path_returns_404(self, group_with_arrays: zarr.Group) -> None: + """A request to the root path '/' should return 404 because an empty + string is not a valid zarr key.""" + app = node_app(group_with_arrays) + client = TestClient(app) + + response = client.get("/") + assert response.status_code == 404 + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestShardedArrayByteRangeReads: + """Byte-range reads against a sharded array served via node_app.""" + + def test_range_read_returns_206(self, group_with_arrays: zarr.Group) -> None: + """A Range header requesting a specific byte range (e.g. bytes=0-7) should + return 206 Partial Content with exactly those bytes.""" + arr = group_with_arrays["sharded"] + assert isinstance(arr, zarr.Array) + arr[:] = np.arange(64, dtype="i4").reshape((8, 8)) + + app = node_app(group_with_arrays) + client = TestClient(app) + + # c/0/0 is the first shard key for an (8,8) array with (4,4) shards. + full_response = client.get("/sharded/c/0/0") + assert full_response.status_code == 200 + full_body = full_response.content + + # Request the first 8 bytes. + range_response = client.get("/sharded/c/0/0", headers={"Range": "bytes=0-7"}) + assert range_response.status_code == 206 + assert range_response.content == full_body[:8] + + def test_suffix_range_read(self, group_with_arrays: zarr.Group) -> None: + """A suffix byte range (e.g. bytes=-4) should return the last N bytes + of the resource with a 206 status.""" + arr = group_with_arrays["sharded"] + assert isinstance(arr, zarr.Array) + arr[:] = np.arange(64, dtype="i4").reshape((8, 8)) + + app = node_app(group_with_arrays) + client = TestClient(app) + + full_response = client.get("/sharded/c/0/0") + full_body = full_response.content + + # Request the last 4 bytes. + range_response = client.get("/sharded/c/0/0", headers={"Range": "bytes=-4"}) + assert range_response.status_code == 206 + assert range_response.content == full_body[-4:] + + def test_offset_range_read(self, group_with_arrays: zarr.Group) -> None: + """An offset byte range (e.g. bytes=4-) should return all bytes from + the given offset to the end, with a 206 status.""" + arr = group_with_arrays["sharded"] + assert isinstance(arr, zarr.Array) + arr[:] = np.arange(64, dtype="i4").reshape((8, 8)) + + app = node_app(group_with_arrays) + client = TestClient(app) + + full_response = client.get("/sharded/c/0/0") + full_body = full_response.content + + # Request everything from byte 4 onward. + range_response = client.get("/sharded/c/0/0", headers={"Range": "bytes=4-"}) + assert range_response.status_code == 206 + assert range_response.content == full_body[4:] + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestMalformedRangeHeaders: + """Malformed Range headers must return 416, never crash the server.""" + + @pytest.mark.parametrize( + "header", + [ + "bytes=abc-def", + "bytes=-abc", + "bytes=abc-", + "bytes=0-7,10-20", + ], + ) + def test_malformed_range_returns_416(self, store: Store, header: str) -> None: + """Range headers with non-numeric values, multiple ranges, or other + malformed syntax should return 416 Range Not Satisfiable instead of + crashing the server.""" + buf = cpu.buffer_prototype.buffer.from_bytes(b"some data here") + sync(store.set("key", buf)) + + app = store_app(store) + client = TestClient(app, raise_server_exceptions=False) + + response = client.get("/key", headers={"Range": header}) + assert response.status_code == 416 + + def test_non_bytes_unit_returns_416(self, store: Store) -> None: + """A Range header using a unit other than 'bytes' (e.g. 'chars=0-7') + should return 416 because only byte ranges are supported.""" + buf = cpu.buffer_prototype.buffer.from_bytes(b"some data") + sync(store.set("key", buf)) + + app = store_app(store) + client = TestClient(app) + + response = client.get("/key", headers={"Range": "chars=0-7"}) + assert response.status_code == 416 + + +class TestParseRangeHeader: + def test_parser_rejects_an_inverted_range(self) -> None: + """Pin the parser itself: on a MemoryStore an unguarded inverted range + happens to return b"" and still yields 416, so the status code alone + cannot tell whether the guard is present.""" + assert _parse_range_header("bytes=5-2") is None + assert _parse_range_header("bytes=0-0") is not None + + """Unit tests for _parse_range_header.""" + + def test_valid_range(self) -> None: + """'bytes=0-99' should parse into a RangeByteRequest with start=0 and + end=100 (end is exclusive, so the inclusive HTTP end is incremented).""" + from zarr.abc.store import RangeByteRequest + + result = _parse_range_header("bytes=0-99") + assert result == RangeByteRequest(start=0, end=100) + + def test_valid_suffix(self) -> None: + """'bytes=-50' should parse into a SuffixByteRequest requesting the + last 50 bytes of the resource.""" + from zarr.abc.store import SuffixByteRequest + + result = _parse_range_header("bytes=-50") + assert result == SuffixByteRequest(suffix=50) + + def test_valid_offset(self) -> None: + """'bytes=10-' should parse into an OffsetByteRequest starting at + byte 10 and reading to the end of the resource.""" + from zarr.abc.store import OffsetByteRequest + + result = _parse_range_header("bytes=10-") + assert result == OffsetByteRequest(offset=10) + + def test_non_bytes_unit(self) -> None: + """A Range header with a non-'bytes' unit should return None.""" + assert _parse_range_header("chars=0-7") is None + + def test_garbage_values(self) -> None: + """Non-numeric values in the byte range should return None instead + of raising a ValueError.""" + assert _parse_range_header("bytes=abc-def") is None + + def test_multi_range(self) -> None: + """Multi-range requests (e.g. bytes=0-7,10-20) are not supported and + should return None.""" + assert _parse_range_header("bytes=0-7,10-20") is None + + def test_empty_spec(self) -> None: + """A Range header with no range specifier after 'bytes=' should + return None.""" + assert _parse_range_header("bytes=") is None + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestWriteViaPut: + """store_app and node_app can be configured to accept PUT writes.""" + + def test_put_writes_to_store(self, store: Store) -> None: + """A PUT request to store_app with PUT enabled should write the + request body into the store at the given key.""" + app = store_app(store, methods={"GET", "PUT"}) + client = TestClient(app) + + payload = b"hello zarr" + response = client.put("/some/key", content=payload) + assert response.status_code == 204 + + # Verify the data landed in the store. + buf = sync(store.get("some/key", cpu.buffer_prototype)) + assert buf is not None + assert buf.to_bytes() == payload + + def test_put_then_get_roundtrip(self, store: Store) -> None: + """Data written via PUT should be retrievable via a subsequent GET + at the same key.""" + app = store_app(store, methods={"GET", "PUT"}) + client = TestClient(app) + + payload = b"\x00\x01\x02\x03" + client.put("/data/blob", content=payload) + + response = client.get("/data/blob") + assert response.status_code == 200 + assert response.content == payload + + def test_put_rejected_when_not_configured(self, store: Store) -> None: + """PUT requests should return 405 Method Not Allowed when the server + is created with the default methods (GET only).""" + app = store_app(store) + client = TestClient(app) + + response = client.put("/some/key", content=b"data") + assert response.status_code == 405 + + def test_put_on_node_validates_key(self, store: Store, group_with_arrays: zarr.Group) -> None: + """PUT requests via node_app should be rejected with 404 when the + target key is not a valid zarr key (metadata or chunk).""" + app = node_app(group_with_arrays, methods={"GET", "PUT"}) + client = TestClient(app) + + response = client.put("/not_a_zarr_key.bin", content=b"data") + assert response.status_code == 404 + + def test_put_to_valid_chunk_key_succeeds(self, group_with_arrays: zarr.Group) -> None: + """PUT requests via node_app to a valid chunk key should succeed + with 204, and the written data should be retrievable via GET.""" + app = node_app(group_with_arrays, methods={"GET", "PUT"}) + client = TestClient(app) + + payload = b"\x00" * 32 + response = client.put("/regular/c/0/0", content=payload) + assert response.status_code == 204 + + # Confirm it round-trips. + get_response = client.get("/regular/c/0/0") + assert get_response.status_code == 200 + assert get_response.content == payload + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestMethodValidation: + """Only the methods the handler implements may be served.""" + + def test_supported_methods_are_served(self, store: Store) -> None: + """GET, PUT and HEAD each behave as their verb implies.""" + app = store_app(store, methods={"GET", "PUT", "HEAD"}) + client = TestClient(app) + + assert client.put("/zarr.json", content=b'{"a":1}').status_code == 204 + assert client.get("/zarr.json").content == b'{"a":1}' + + # HEAD reports the same status as GET but carries no body. + head = client.head("/zarr.json") + assert head.status_code == 200 + assert head.content == b"" + + def test_empty_method_set_raises(self, store: Store) -> None: + """Asking for no methods must be rejected rather than producing a + server that answers every verb, including writes: Starlette treats a + falsy `methods` on a Route as "match anything".""" + for build in ( + lambda: store_app(store, methods=set()), + lambda: node_app(zarr.open_group(store, mode="a"), methods=set()), + ): + with pytest.raises(ValueError, match="at least one"): + build() + + @pytest.mark.parametrize("method", ["DELETE", "POST", "PATCH", "OPTIONS", "TRACE"]) + def test_unsupported_method_raises(self, store: Store, method: str) -> None: + """A verb the handler cannot implement is rejected when the app is + built, rather than silently answering as if it were a GET.""" + for build in ( + lambda: store_app(store, methods={"GET", method}), # type: ignore[arg-type] + lambda: node_app(zarr.open_group(store, mode="a"), methods={"GET", method}), # type: ignore[arg-type] + ): + with pytest.raises(ValueError, match=method): + build() + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestStoreAppEdgeCases: + """Edge cases for store_app.""" + + def test_get_nonexistent_key_returns_404(self, store: Store) -> None: + """GET for a key that does not exist in the store should return 404.""" + app = store_app(store) + client = TestClient(app) + + response = client.get("/no/such/key") + assert response.status_code == 404 + + def test_empty_path_returns_404(self, store: Store) -> None: + """GET to the root path '/' (empty key) should return 404 because + an empty string is not a valid store key.""" + app = store_app(store) + client = TestClient(app) + + response = client.get("/") + assert response.status_code == 404 + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestNodeAppDirectArray: + """Serve a single array directly (not through a group).""" + + def test_serve_nested_array_directly(self, store: Store) -> None: + """When node_app is given a nested array (not a group), requests + should use keys relative to that array's path. Metadata and in-bounds + chunks should return 200, and out-of-bounds chunks should return 404.""" + root = zarr.open_group(store, mode="w") + arr = zarr.create_array( + root.store_path / "sub/nested", + shape=(4,), + chunks=(2,), + dtype="f8", + ) + arr[:] = np.arange(4, dtype="f8") + + # Serve the array directly — its prefix is "sub/nested". + app = node_app(arr) + client = TestClient(app) + + # Metadata should be accessible at the array root. + response = client.get("/zarr.json") + assert response.status_code == 200 + + # Chunk keys are relative to the array. + response = client.get("/c/0") + assert response.status_code == 200 + + response = client.get("/c/1") + assert response.status_code == 200 + + # Out of bounds. + response = client.get("/c/99") + assert response.status_code == 404 + + def test_serve_root_array(self, store: Store) -> None: + """When node_app is given an array stored at the root of a store + (empty prefix), metadata and chunk keys should be accessible at + their natural paths.""" + arr = zarr.create_array( + store, + shape=(6,), + chunks=(3,), + dtype="i4", + ) + arr[:] = np.arange(6, dtype="i4") + + # Root-level array has prefix = "". + app = node_app(arr) + client = TestClient(app) + + response = client.get("/zarr.json") + assert response.status_code == 200 + + response = client.get("/c/0") + assert response.status_code == 200 + + response = client.get("/c/1") + assert response.status_code == 200 + + response = client.get("/c/2") + assert response.status_code == 404 + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestContentType: + """Responses should have the correct Content-Type.""" + + def test_metadata_has_json_content_type(self, group_with_arrays: zarr.Group) -> None: + """Zarr metadata files (zarr.json) should be served with + Content-Type: application/json.""" + app = node_app(group_with_arrays) + client = TestClient(app) + + response = client.get("/zarr.json") + assert response.status_code == 200 + assert response.headers["content-type"] == "application/json" + + def test_chunk_has_octet_stream_content_type(self, group_with_arrays: zarr.Group) -> None: + """Chunk data should be served with Content-Type: application/octet-stream + since it is binary data.""" + arr = group_with_arrays["regular"] + assert isinstance(arr, zarr.Array) + arr[:] = np.ones((4, 4)) + + app = node_app(group_with_arrays) + client = TestClient(app) + + response = client.get("/regular/c/0/0") + assert response.status_code == 200 + assert response.headers["content-type"] == "application/octet-stream" + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestCorsMiddleware: + """CORS middleware should add the expected headers.""" + + def test_cors_headers_present(self, store: Store) -> None: + """When cors_options are provided, responses should include the + Access-Control-Allow-Origin header matching the request origin.""" + buf = cpu.buffer_prototype.buffer.from_bytes(b"data") + sync(store.set("key", buf)) + + cors = CorsOptions(allow_origins=["https://example.com"], allow_methods=["GET"]) + app = store_app(store, cors_options=cors) + client = TestClient(app) + + response = client.get("/key", headers={"Origin": "https://example.com"}) + assert response.status_code == 200 + assert response.headers["access-control-allow-origin"] == "https://example.com" + + def test_cors_preflight(self, store: Store) -> None: + """CORS preflight OPTIONS requests should return 200 with the + Access-Control-Allow-Origin header when CORS is configured.""" + cors = CorsOptions(allow_origins=["*"], allow_methods=["GET", "PUT"]) + app = store_app(store, methods={"GET", "PUT"}, cors_options=cors) + client = TestClient(app) + + response = client.options( + "/any/path", + headers={ + "Origin": "https://example.com", + "Access-Control-Request-Method": "PUT", + }, + ) + assert response.status_code == 200 + assert "access-control-allow-origin" in response.headers + + def test_no_cors_headers_without_option(self, store: Store) -> None: + """When no cors_options are provided, responses should not include + any CORS headers, even if the request includes an Origin header.""" + buf = cpu.buffer_prototype.buffer.from_bytes(b"data") + sync(store.set("key", buf)) + + app = store_app(store) + client = TestClient(app) + + response = client.get("/key", headers={"Origin": "https://example.com"}) + assert response.status_code == 200 + assert "access-control-allow-origin" not in response.headers + + +def _metadata_key(zarr_format: ZarrFormat) -> str: + """Return the metadata key for the given zarr format.""" + return "zarr.json" if zarr_format == 3 else ".zarray" + + +def _chunk_key(zarr_format: ZarrFormat, coords: str) -> str: + """Return a chunk key for the given format. + + *coords* is a dot-separated string like ``"0.0"``. For v3 this becomes + ``"c/0/0"``; for v2 it is returned unchanged. + """ + if zarr_format == 3: + return "c/" + coords.replace(".", "/") + return coords + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestNodeAppV2AndV3: + """Test node_app with both v2 and v3 arrays side by side.""" + + def test_metadata_accessible(self, store: Store, zarr_format: ZarrFormat) -> None: + """The format-appropriate metadata key should be served with 200.""" + arr = zarr.create_array(store, shape=(4,), chunks=(2,), dtype="f8", zarr_format=zarr_format) + app = node_app(arr) + client = TestClient(app) + + response = client.get(f"/{_metadata_key(zarr_format)}") + assert response.status_code == 200 + + def test_chunk_accessible(self, store: Store, zarr_format: ZarrFormat) -> None: + """An in-bounds chunk key should be served with 200 for both formats.""" + arr = zarr.create_array(store, shape=(4,), chunks=(2,), dtype="f8", zarr_format=zarr_format) + arr[:] = np.ones(4) + + app = node_app(arr) + client = TestClient(app) + + response = client.get(f"/{_chunk_key(zarr_format, '0')}") + assert response.status_code == 200 + + def test_out_of_bounds_chunk_returns_404(self, store: Store, zarr_format: ZarrFormat) -> None: + """An out-of-bounds chunk key should return 404 for both formats.""" + arr = zarr.create_array(store, shape=(4,), chunks=(2,), dtype="f8", zarr_format=zarr_format) + arr[:] = np.ones(4) + + # Plant data at the out-of-grid key so the 404 must come from the + # bounds check rather than from the key being absent. + key = _chunk_key(zarr_format, "99") + sync(store.set(key, cpu.buffer_prototype.buffer.from_bytes(b"out of grid"))) + assert sync(store.get(key, cpu.buffer_prototype)) is not None + + app = node_app(arr) + client = TestClient(app) + + response = client.get(f"/{key}") + assert response.status_code == 404 + + def test_non_zarr_key_returns_404(self, store: Store, zarr_format: ZarrFormat) -> None: + """A non-zarr key should return 404 regardless of format.""" + arr = zarr.create_array(store, shape=(4,), chunks=(2,), dtype="f8", zarr_format=zarr_format) + non_zarr_buf = cpu.buffer_prototype.buffer.from_bytes(b"secret") + sync(store.set("secret.txt", non_zarr_buf)) + + app = node_app(arr) + client = TestClient(app) + + response = client.get("/secret.txt") + assert response.status_code == 404 + + def test_data_roundtrip(self, store: Store, zarr_format: ZarrFormat) -> None: + """Data written to an array should be readable via store_app for + both formats.""" + arr = zarr.create_array(store, shape=(4,), chunks=(2,), dtype="f8", zarr_format=zarr_format) + arr[:] = np.arange(4, dtype="f8") + + app = store_app(store) + client = TestClient(app) + + # Metadata should be accessible. + response = client.get(f"/{_metadata_key(zarr_format)}") + assert response.status_code == 200 + + # First chunk should be accessible. + response = client.get(f"/{_chunk_key(zarr_format, '0')}") + assert response.status_code == 200 + assert len(response.content) > 0 + + +class TestPathTraversalProtection: + """store_app and node_app must reject path-traversal attempts before + touching the store, regardless of URL-encoding tricks.""" + + def test_get_traversal_outside_store_root_returns_404(self, tmp_path: Any) -> None: + """A GET for a percent-encoded '../secret.txt' must not escape the + store root and read a file outside it.""" + from zarr.storage import LocalStore + + root = tmp_path / "store_root" + root.mkdir() + secret = tmp_path / "secret.txt" + secret.write_text("top secret contents") + + store = LocalStore(root) + app = store_app(store, methods={"GET", "PUT"}) + client = TestClient(app) + + response = client.get("/..%2fsecret.txt") + assert response.status_code == 404 + assert b"top secret" not in response.content + + def test_put_traversal_outside_store_root_returns_404(self, tmp_path: Any) -> None: + """A PUT to a percent-encoded '../pwned.txt' must not escape the + store root and write a file outside it.""" + from zarr.storage import LocalStore + + root = tmp_path / "store_root" + root.mkdir() + pwned = tmp_path / "pwned.txt" + + store = LocalStore(root) + app = store_app(store, methods={"GET", "PUT"}) + client = TestClient(app) + + response = client.put("/..%2fpwned.txt", content=b"pwned") + assert response.status_code == 404 + assert not pwned.exists() + + @pytest.mark.parametrize( + ("encoded_path", "climb_depth"), + [ + ("/..%2fsecret.txt", 1), + ("/%2e%2e/secret.txt", 1), + ("/..%2f..%2fsecret.txt", 2), + ], + ) + def test_encoded_traversal_variants_return_404( + self, tmp_path: Any, encoded_path: str, climb_depth: int + ) -> None: + """Various percent-encoded traversal spellings must all be rejected. + + The store root is nested exactly ``climb_depth`` directories below + ``tmp_path`` and the secret lives at ``tmp_path/secret.txt`` -- the + exact location each traversal's ".." segments resolve to -- so a + case with a missing or deleted guard would actually reach the + secret instead of just returning 404 for an unrelated reason (e.g. + a two-level climb landing on a directory that happens to be empty). + """ + from zarr.storage import LocalStore + + parts = [f"level{i}" for i in range(climb_depth - 1)] + ["store_root"] + root = tmp_path.joinpath(*parts) + root.mkdir(parents=True) + secret = tmp_path / "secret.txt" + secret.write_text("top secret contents") + + store = LocalStore(root) + app = store_app(store, methods={"GET", "PUT"}) + client = TestClient(app) + + response = client.get(encoded_path) + assert response.status_code == 404 + assert b"top secret" not in response.content + + def test_get_absolute_key_bypass_returns_404(self, tmp_path: Any) -> None: + """A percent-encoded leading slash decodes to an ABSOLUTE path param + (e.g. request '/%2fetc%2fhostname' -> path param '/etc/hostname'). + '/etc/hostname'.split('/') -> ['', 'etc', 'hostname'] has no '.' or + '..' segment, so the two-element guard misses it, but LocalStore + resolves an absolute key by discarding its root entirely -- an + arbitrary-file read. The empty leading segment must be rejected.""" + from zarr.storage import LocalStore + + root = tmp_path / "store_root" + root.mkdir() + secret = tmp_path / "secret_abs.txt" + secret.write_text("top secret absolute contents") + + store = LocalStore(root) + app = store_app(store, methods={"GET", "PUT"}) + client = TestClient(app) + + # Mirror the exploit: percent-encode every "/" (including the + # leading one) in the absolute secret path as "%2f". + encoded_path = "/" + str(secret).replace("/", "%2f") + + response = client.get(encoded_path) + assert response.status_code == 404 + assert b"top secret absolute" not in response.content + assert secret.read_text() == "top secret absolute contents" + + def test_put_absolute_key_bypass_returns_404(self, tmp_path: Any) -> None: + """Same absolute-key vector as above, but for PUT: a percent-encoded + leading slash must not allow writing a file outside the store root.""" + from zarr.storage import LocalStore + + root = tmp_path / "store_root" + root.mkdir() + pwned = tmp_path / "pwned_abs.txt" + + store = LocalStore(root) + app = store_app(store, methods={"GET", "PUT"}) + client = TestClient(app) + + encoded_path = "/" + str(pwned).replace("/", "%2f") + + response = client.put(encoded_path, content=b"pwned") + assert response.status_code == 404 + assert not pwned.exists() + + @pytest.mark.parametrize( + "encoded_path", + [ + "/..%5C..%5Cwin.ini", + "/%5CWindows%5Cwin.ini", + "/C:/Windows/win.ini", + "/C:%5CWindows", + "/%5C%5Chost%5Cshare%5Cx", + ], + ) + def test_backslash_and_drive_traversal_variants_return_404(self, encoded_path: str) -> None: + """Backslash is a path separator on Windows, and a drive-qualified or + root-relative key discards a filesystem store's root entirely on + Windows, even though POSIX only ever treats '/' as a separator. The + guard must reject these purely from the string, before the store is + ever touched -- verified here by making the store raise if called.""" + from unittest.mock import AsyncMock + + from zarr.storage import MemoryStore + + store = MemoryStore() + store.get = AsyncMock(side_effect=AssertionError("store.get should not be called")) # type: ignore[method-assign] + store.set = AsyncMock(side_effect=AssertionError("store.set should not be called")) # type: ignore[method-assign] + + app = store_app(store, methods={"GET", "PUT"}) + client = TestClient(app) + + response = client.get(encoded_path) + assert response.status_code == 404 + + def test_put_backslash_traversal_returns_404(self) -> None: + """A PUT to a backslash-encoded '..\\..\\pwned.txt' must be rejected + before the store is touched, mirroring the GET case above.""" + from unittest.mock import AsyncMock + + from zarr.storage import MemoryStore + + store = MemoryStore() + store.set = AsyncMock(side_effect=AssertionError("store.set should not be called")) # type: ignore[method-assign] + + app = store_app(store, methods={"GET", "PUT"}) + client = TestClient(app) + + response = client.put("/..%5C..%5Cpwned.txt", content=b"pwned") + assert response.status_code == 404 + + +def _get_free_port() -> int: + """Return an unused TCP port on localhost.""" + import socket + + with socket.socket() as s: + s.bind(("127.0.0.1", 0)) + port: int = s.getsockname()[1] + return port + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestServeBackground: + """Test serve_store and serve_node with background=True.""" + + def test_serve_store_background(self, store: Store) -> None: + """serve_store(background=True) should return a BackgroundServer + that responds to HTTP requests and can be used as a context manager.""" + import httpx + + from zarr_http_server import serve_store + + buf = cpu.buffer_prototype.buffer.from_bytes(b"hello") + sync(store.set("key", buf)) + + port = _get_free_port() + with serve_store(store, host="127.0.0.1", port=port, background=True) as server: + assert server.host == "127.0.0.1" + assert server.port == port + assert server.url == f"http://127.0.0.1:{port}" + + response = httpx.get(f"{server.url}/key") + assert response.status_code == 200 + assert response.content == b"hello" + + def test_serve_node_background(self, store: Store) -> None: + """serve_node(background=True) should return a BackgroundServer + that responds to HTTP requests and can be used as a context manager.""" + import httpx + + from zarr_http_server import serve_node + + arr = zarr.create_array(store, shape=(4,), chunks=(2,), dtype="f8") + arr[:] = np.arange(4, dtype="f8") + + port = _get_free_port() + with serve_node(arr, host="127.0.0.1", port=port, background=True) as server: + response = httpx.get(f"{server.url}/zarr.json") + assert response.status_code == 200 + + +class TestStoreFailuresAreNotReportedAsMisses: + """Under the v3 spec an absent chunk is an uninitialized one, and a reader + is right to substitute the array's fill value for it. A 404 therefore + asserts something about the store's contents, and an I/O failure must not + borrow it -- that would have a correct client materialize fill values over + data that exists.""" + + @pytest.mark.skipif(os.geteuid() == 0, reason="root bypasses the permission bits under test") + def test_unreadable_key_is_a_server_error(self, tmp_path: pathlib.Path) -> None: + root = tmp_path / "root" + root.mkdir() + (root / "key").write_bytes(b"real data") + os.chmod(root / "key", 0o000) + + client = TestClient(store_app(LocalStore(str(root))), raise_server_exceptions=False) + try: + assert client.get("/key").status_code >= 500 + finally: + os.chmod(root / "key", 0o600) + + @pytest.mark.skipif(os.geteuid() == 0, reason="root bypasses the permission bits under test") + def test_unwritable_store_is_a_server_error(self, tmp_path: pathlib.Path) -> None: + root = tmp_path / "ro" + root.mkdir() + os.chmod(root, 0o500) + + client = TestClient( + store_app(LocalStore(str(root)), methods={"GET", "PUT"}), + raise_server_exceptions=False, + ) + try: + assert client.put("/key", content=b"data").status_code >= 500 + finally: + os.chmod(root, 0o700) + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestShardGridBounds: + """A sharded array's storage grid is its shard grid, not its chunk grid.""" + + def test_out_of_shard_grid_key_returns_404(self, store: Store) -> None: + arr = zarr.create_array(store, shape=(8, 8), chunks=(2, 2), shards=(4, 4), dtype="i4") + arr[:] = np.arange(64, dtype="i4").reshape(8, 8) + + # (8,8) with (4,4) shards has a 2x2 shard grid, so c/3/3 is out of it. + # Plant data there so the 404 must come from the bounds check. + sync(store.set("c/3/3", cpu.buffer_prototype.buffer.from_bytes(b"PLANTED"))) + assert sync(store.get("c/3/3", cpu.buffer_prototype)) is not None + + client = TestClient(node_app(arr)) + assert client.get("/c/0/0").status_code == 200 + assert client.get("/c/3/3").status_code == 404 + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestWrongArityChunkKeys: + """A chunk key with the wrong number of coordinates is invalid, and must + not reach the grid comparison -- zip(strict=True) would raise there.""" + + @pytest.mark.parametrize("key", ["c/0", "c/0/0/0", "c/0/0/0/0"]) + def test_wrong_arity_returns_404(self, store: Store, key: str) -> None: + arr = zarr.create_array(store, shape=(4, 4), chunks=(2, 2), dtype="f8") + arr[:] = np.ones((4, 4)) + + sync(store.set(key, cpu.buffer_prototype.buffer.from_bytes(b"PLANTED"))) + + client = TestClient(node_app(arr), raise_server_exceptions=False) + assert client.get(f"/{key}").status_code == 404 + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestNodeNamesContainingAColon: + """A leading `:` is a drive reference to `ntpath`, so the guard rejects + it on every platform to keep it a pure string gate in front of any store. + The documented cost is that such a name is unreachable in the first + segment -- but only there.""" + + def test_colon_named_node_in_a_later_segment_is_served(self, store: Store) -> None: + root = zarr.open_group(store, mode="w") + sub = root.create_group("sub") + sub.create_array("a:b", shape=(2,), chunks=(2,), dtype="f8") + + client = TestClient(node_app(root)) + assert client.get("/sub/a:b/zarr.json").status_code == 200 + + def test_colon_named_node_in_the_first_segment_is_rejected(self, store: Store) -> None: + root = zarr.open_group(store, mode="w") + root.create_array("a:b", shape=(2,), chunks=(2,), dtype="f8") + + client = TestClient(node_app(root)) + assert client.get("/a:b/zarr.json").status_code == 404 + + +class TestChunkedBodyIsCapped: + """A chunked request carries no Content-Length, so the cap has to hold + while the body is being read rather than after it is buffered.""" + + def test_chunked_body_over_cap_is_rejected(self, tmp_path: pathlib.Path) -> None: + store = LocalStore(str(tmp_path / "root")) + client = TestClient( + store_app(store, methods={"GET", "PUT"}, max_body_size=64), + raise_server_exceptions=False, + ) + + def body() -> Iterator[bytes]: + for _ in range(20): + yield b"x" * 32 + + # httpx sends an iterator body with Transfer-Encoding: chunked. + assert client.put("/key", content=body()).status_code == 413 + assert not (tmp_path / "root" / "key").exists() + + +class TestHostileKeysAreNotServerErrors: + """A key the store cannot express is a miss, not a server fault: the + server must never answer 5xx for input a client can choose freely. + + This needs a filesystem-backed store -- a `MemoryStore` accepts any key + as a dict key, so only `LocalStore` surfaces the underlying errors (an + embedded NUL, a name longer than the filesystem allows). + """ + + @pytest.mark.parametrize( + "path", ["/x%00y", "/ok.txt%00", "/" + "a" * 3000, "/" + "b" * 3000 + "/zarr.json"] + ) + def test_unexpressable_key_returns_404_not_500(self, tmp_path: pathlib.Path, path: str) -> None: + store = LocalStore(str(tmp_path / "root")) + client = TestClient(store_app(store, methods={"GET", "PUT"})) + + assert client.get(path).status_code == 404 + assert client.put(path, content=b"x").status_code == 404 + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestPutBodyLimit: + """`Store.set` takes a whole buffer, so an unbounded body would let one + request size the server's memory use.""" + + def test_body_over_the_limit_is_rejected(self, store: Store) -> None: + client = TestClient(store_app(store, methods={"GET", "PUT"}, max_body_size=64)) + + assert client.put("/key", content=b"x" * 65).status_code == 413 + # Nothing was written. + assert sync(store.get("key", cpu.buffer_prototype)) is None + # A body within the limit still succeeds. + assert client.put("/key", content=b"x" * 64).status_code == 204 + + def test_limit_can_be_lifted(self, store: Store) -> None: + client = TestClient(store_app(store, methods={"GET", "PUT"}, max_body_size=None)) + assert client.put("/key", content=b"x" * 5000).status_code == 204 + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestRangeResponseCorrectness: + """A 206 must describe which bytes it carries, and a range that cannot be + satisfied must say so rather than returning an empty 206.""" + + def test_206_carries_content_range(self, store: Store) -> None: + sync(store.set("key", cpu.buffer_prototype.buffer.from_bytes(b"0123456789"))) + client = TestClient(store_app(store)) + + response = client.get("/key", headers={"Range": "bytes=2-5"}) + assert response.status_code == 206 + assert response.content == b"2345" + assert response.headers["Content-Range"] == "bytes 2-5/*" + + def test_range_beyond_end_is_416(self, store: Store) -> None: + sync(store.set("key", cpu.buffer_prototype.buffer.from_bytes(b"0123456789"))) + client = TestClient(store_app(store)) + + assert client.get("/key", headers={"Range": "bytes=1000-2000"}).status_code == 416 + + def test_inverted_range_is_416(self, store: Store) -> None: + sync(store.set("key", cpu.buffer_prototype.buffer.from_bytes(b"0123456789"))) + client = TestClient(store_app(store)) + + assert client.get("/key", headers={"Range": "bytes=5-2"}).status_code == 416 + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestZeroDimensionalArray: + """A 0-d array has exactly one chunk, spelled `0` in v2 and `c` in v3.""" + + @pytest.mark.parametrize("zarr_format", [2, 3]) + def test_sole_chunk_is_served(self, store: Store, zarr_format: ZarrFormat) -> None: + arr = zarr.create_array(store, shape=(), dtype="i4", zarr_format=zarr_format) + arr[...] = 7 + + client = TestClient(node_app(arr)) + chunk_key = "0" if zarr_format == 2 else "c" + + assert client.get(f"/{chunk_key}").status_code == 200 + # A 1-d coordinate is not valid for a 0-d grid. + assert client.get("/0/0").status_code == 404 + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestGroupAndArrayMetadataKeysAreDistinct: + """A v2 group owns `.zgroup`; `.zarray` belongs to arrays, and vice versa.""" + + def test_node_does_not_claim_the_other_kind_of_metadata(self, store: Store) -> None: + root = zarr.open_group(store, mode="w", zarr_format=2) + arr = root.create_array("a", shape=(2,), chunks=(2,), dtype="f8") + + # Plant both documents so a 404 reflects the key set, not absence. + sync(store.set(".zarray", cpu.buffer_prototype.buffer.from_bytes(b"{}"))) + sync(store.set("a/.zgroup", cpu.buffer_prototype.buffer.from_bytes(b"{}"))) + + assert TestClient(node_app(root)).get("/.zarray").status_code == 404 + assert TestClient(node_app(arr)).get("/.zgroup").status_code == 404 + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestBackgroundServerReportsBoundPort: + """`port=0` asks the OS for a free port, so the server must report the + port it actually bound rather than the zero it was asked for.""" + + def test_port_zero_reports_the_bound_port(self, store: Store) -> None: + import httpx + + from zarr_http_server import serve_store + + sync(store.set("key", cpu.buffer_prototype.buffer.from_bytes(b"hello"))) + + with serve_store(store, host="127.0.0.1", port=0, background=True) as server: + assert server.port != 0 + assert server.url == f"http://127.0.0.1:{server.port}" + # The reported URL is the one that actually serves the data. + assert httpx.get(f"{server.url}/key").content == b"hello" + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestUnopenableChildIsNotAnError: + """A child a node_app cannot open makes a key unverifiable, not the + request an error -- validating key *shape* never needs to decode data.""" + + def test_child_with_unparseable_metadata_returns_404(self, store: Store) -> None: + """A corrupt child metadata document must yield 404, not a 500 that + makes the whole subtree unservable with a traceback per request.""" + root = zarr.open_group(store, mode="w") + root.create_array("good", shape=(2,), chunks=(2,), dtype="f8") + sync(store.set("junk/zarr.json", cpu.buffer_prototype.buffer.from_bytes(b"not json"))) + + client = TestClient(node_app(root)) + + assert client.get("/good/zarr.json").status_code == 200 + assert client.get("/junk/zarr.json").status_code == 404 + assert client.get("/junk/c/0").status_code == 404 + + +@pytest.mark.parametrize("store", ["memory"], indirect=True) +class TestReadBackWithZarrClient: + """The round-trip the README leads with: serve an array, then open it + with a zarr client over HTTP. + + This needs an HTTP-capable fsspec, which is a client-side concern that + `zarr-http-server` deliberately does not depend on -- it lives in the `docs` + dependency group, alongside the other deps the README examples need. + """ + + def test_served_array_reads_back_identically(self, store: Store) -> None: + """`zarr.open_array(server.url)` should return the same data that was + served, so the README's headline example stays true.""" + pytest.importorskip("fsspec") + pytest.importorskip("aiohttp") + + from zarr_http_server import serve_node + + expected = np.arange(100, dtype="uint8").reshape(10, 10) + arr = zarr.create_array(store, data=expected, chunks=(5, 5), write_data=True) + + port = _get_free_port() + with serve_node(arr, host="127.0.0.1", port=port, background=True) as server: + remote = zarr.open_array(server.url, mode="r") + np.testing.assert_array_equal(remote[:], expected) + + +class TestBackgroundServerBoundedShutdown: + """BackgroundServer.shutdown() must not hang forever on a slow or stuck + in-flight request.""" + + def test_shutdown_returns_promptly_with_slow_inflight_request(self) -> None: + """A request that takes far longer than shutdown_timeout must not + prevent shutdown() from returning within roughly shutdown_timeout, + via uvicorn's force_exit rather than an unbounded thread join.""" + import asyncio + import threading + import time + + import httpx + from starlette.applications import Starlette + from starlette.responses import Response + from starlette.routing import Route + + from zarr_http_server._serve import _start_server + + async def slow(request: Any) -> Response: + # Sleeps far longer than shutdown_timeout below, so a correct + # implementation must force the connection closed rather than + # wait for this to finish. + await asyncio.sleep(5) + return Response(status_code=204) + + app = Starlette(routes=[Route("/slow", slow, methods=["GET"])]) + port = _get_free_port() + server = _start_server( + app, host="127.0.0.1", port=port, background=True, shutdown_timeout=1 + ) + assert server is not None + + request_errors: list[BaseException] = [] + + def make_slow_request() -> None: + try: + httpx.get(f"http://127.0.0.1:{port}/slow", timeout=10) + except Exception as exc: # connection drop when the server force-closes is expected + request_errors.append(exc) + + request_thread = threading.Thread(target=make_slow_request, 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specifier = "==2.34.2" }, + { name = "s3fs", specifier = ">=2023.10.0" }, + { name = "tomlkit", specifier = "==0.15.0" }, + { name = "uv", specifier = "==0.11.26" }, +] +test = [ + { name = "coverage", specifier = "==7.14.3" }, + { name = "hypothesis", specifier = "==6.155.7" }, + { name = "numpydoc", specifier = "==1.10.0" }, + { name = "pytest", specifier = "==9.1.1" }, + { name = "pytest-accept", specifier = "==0.3.0" }, + { name = "pytest-asyncio", specifier = "==1.4.0" }, + { name = "pytest-benchmark", specifier = "==5.2.3" }, + { name = "pytest-codspeed", specifier = "==5.0.3" }, + { name = "pytest-cov", specifier = "==7.1.0" }, + { name = "pytest-xdist", specifier = "==3.8.0" }, + { name = "tomlkit", specifier = "==0.15.0" }, + { name = "uv", specifier = "==0.11.26" }, +] + +[[package]] +name = "zarr-http-server" +source = { editable = "." } +dependencies = [ + { name = "starlette" }, + { name = "uvicorn" }, + { name = "zarr" }, +] + +[package.dev-dependencies] +docs = [ + { name = "fsspec", extra = ["http"] }, + { name = "httpx" }, +] +test = [ + { name = "httpx" }, + { name = "httpx2" }, + { name = "pytest" }, +] + +[package.metadata] +requires-dist = [ + { name = "starlette", specifier = ">=1.0" }, + { name = "uvicorn", specifier = ">=0.29" }, + { name = "zarr", editable = "../../" }, +] + +[package.metadata.requires-dev] +docs = [ + { name = "fsspec", extras = ["http"] }, + { name = "httpx" }, +] +test = [ + { name = "httpx" }, + { name = "httpx2" }, + { name = "pytest" }, +] diff --git a/pyproject.toml b/pyproject.toml index 727071b5a3..f55d2ef296 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -160,9 +160,9 @@ omit = [ version.source = "vcs" # Only consider zarr-python's own `v*` tags when deriving the version. Without # this filter `git describe` matches the most recent tag of any shape, -# including the `zarr_metadata-v*` tags used to release the zarr-metadata -# subpackage — which would make a from-source build report a `0.2.x` version -# instead of `3.x`. +# including the `zarr_metadata-v*` and `zarr_http_server-v*` tags used to +# release the subpackages under `packages/` — which would make a from-source +# build report e.g. a `0.2.x` version instead of `3.x`. version.raw-options = { git_describe_command = "git describe --dirty --tags --long --match v*" } [tool.hatch.build] diff --git a/src/zarr/core/chunk_key_encodings.py b/src/zarr/core/chunk_key_encodings.py index 098f2c8981..fb2fd95dee 100644 --- a/src/zarr/core/chunk_key_encodings.py +++ b/src/zarr/core/chunk_key_encodings.py @@ -79,7 +79,11 @@ def __post_init__(self) -> None: def decode_chunk_key(self, chunk_key: str) -> tuple[int, ...]: if chunk_key == "c": return () - return tuple(map(int, chunk_key[1:].split(self.separator))) + # Strip the "c" prefix (e.g. "c/" or "c.") before splitting. + prefix = "c" + self.separator + if chunk_key.startswith(prefix): + return tuple(map(int, chunk_key[len(prefix) :].split(self.separator))) + raise ValueError(f"Invalid chunk key for default encoding: {chunk_key!r}") def encode_chunk_key(self, chunk_coords: tuple[int, ...]) -> str: return self.separator.join(map(str, ("c",) + chunk_coords)) diff --git a/tests/test_chunk_key_encodings.py b/tests/test_chunk_key_encodings.py new file mode 100644 index 0000000000..dcc93b9249 --- /dev/null +++ b/tests/test_chunk_key_encodings.py @@ -0,0 +1,65 @@ +from __future__ import annotations + +import pytest + +from zarr.core.chunk_key_encodings import DefaultChunkKeyEncoding, V2ChunkKeyEncoding + + +@pytest.mark.parametrize("separator", ["/", "."]) +@pytest.mark.parametrize( + "coords", + [(), (0,), (1, 2), (10, 0, 3)], +) +def test_default_encoding_round_trips(separator: str, coords: tuple[int, ...]) -> None: + """Encoding coordinates and decoding the result returns the coordinates.""" + encoding = DefaultChunkKeyEncoding(separator=separator) # type: ignore[arg-type] + + key = encoding.encode_chunk_key(coords) + assert encoding.decode_chunk_key(key) == coords + + +@pytest.mark.parametrize("separator", ["/", "."]) +@pytest.mark.parametrize("coords", [(0,), (1, 2), (10, 0, 3)]) +def test_v2_encoding_round_trips(separator: str, coords: tuple[int, ...]) -> None: + """The v2 encoding round-trips coordinates for either separator.""" + encoding = V2ChunkKeyEncoding(separator=separator) # type: ignore[arg-type] + + key = encoding.encode_chunk_key(coords) + assert encoding.decode_chunk_key(key) == coords + + +@pytest.mark.parametrize("separator", ["/", "."]) +def test_v2_zero_dimensional_key_is_ambiguous(separator: str) -> None: + """A 0-d v2 array stores its sole chunk under `"0"`, the same key a 1-d + array uses for chunk 0, so decoding cannot recover the empty tuple on its + own -- the array's dimensionality is what disambiguates it.""" + encoding = V2ChunkKeyEncoding(separator=separator) # type: ignore[arg-type] + + assert encoding.encode_chunk_key(()) == "0" + assert encoding.decode_chunk_key("0") == (0,) + + +@pytest.mark.parametrize( + "chunk_key", + [ + "0/1", # no "c" prefix at all + "c0/1", # "c" not followed by the separator + "x/0/1", # wrong prefix character + "", + ], +) +def test_default_encoding_rejects_key_without_prefix(chunk_key: str) -> None: + """A key that does not carry the `c` prefix is not a chunk key + for this encoding, and must be rejected rather than silently decoded.""" + encoding = DefaultChunkKeyEncoding(separator="/") + + with pytest.raises(ValueError, match="Invalid chunk key"): + encoding.decode_chunk_key(chunk_key) + + +def test_default_encoding_rejects_key_using_the_other_separator() -> None: + """A key encoded with `.` is not valid for a `/`-separated encoding.""" + encoding = DefaultChunkKeyEncoding(separator="/") + + with pytest.raises(ValueError, match="Invalid chunk key"): + encoding.decode_chunk_key("c.0.1") diff --git a/uv.lock b/uv.lock index 6035acc616..495433584a 100644 --- a/uv.lock +++ b/uv.lock @@ -1041,11 +1041,11 @@ wheels = [ [[package]] name = "idna" -version = "3.15" +version = "3.18" source = { registry = "https://pypi.org/simple" } -sdist = { url = "https://files.pythonhosted.org/packages/82/77/7b3966d0b9d1d31a36ddf1746926a11dface89a83409bf1483f0237aa758/idna-3.15.tar.gz", hash = "sha256:ca962446ea538f7092a95e057da437618e886f4d349216d2b1e294abfdb65fdc", size = 199245, upload-time = "2026-05-12T22:45:57.011Z" } +sdist = { url = "https://files.pythonhosted.org/packages/cd/63/9496c57188a2ee585e0f1db071d75089a11e98aa86eb99d9d7618fc1edce/idna-3.18.tar.gz", hash = "sha256:ffb385a7e039654cef1ab9ef32c6fafe283c0c0467bba1d9029738ce4a14a848", size = 196711, upload-time = "2026-06-02T14:34:07.794Z" } wheels = [ - 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