Trigger cryoSIM processing - #841

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tieneupin merged 17 commits into

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trigger-cryosim-processing

Jul 16, 2026

Commits on Jul 14, 2026

Added new router module with an endpoint to submit SIM data processing jobs to RabbitMQ
tieneupin
committed
1dd1147
Added CryoSIM context to list of Murfey context entry points
tieneupin
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9ff1ab4
Added new utility module containing shared variables and functions used by the CryoSIM workflow
tieneupin
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e054490
Added logic to the Analyser to identify and set CryoSIM context
tieneupin
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020268f
Added logic to the CryoSIM context to identify raw data files and submit them for processing
tieneupin
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9ac66a2
Forgot to rename logger for cryoSIM API module
tieneupin
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3eb39ee
Added test for the 'request_sim_processing' API endpoint
tieneupin
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ca1409f
Updated cryoSIM raw data suffixes
tieneupin
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f424cee
Added tests for the Analyser for the cryoSIM workflow
tieneupin
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3fc0665
Updated tests for the cryoSIM context to reflect updated functionality
tieneupin
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008e62b
Sanitise file path
tieneupin
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7a783a7
Put the file endings in the Analyser and SIMContext files directly; Analyser should determine context using bright field files as well, whereas 'capture_post' should only be triggered on fluorescen…
tieneupin
committed
9d1395e
Updated tests to reflect new behaviour
tieneupin
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c5219b4

Commits on Jul 15, 2026

Commits on Jul 16, 2026