GitHub - MouseLightProject/mouselight_toolbox: A Matlab toolbox for doing MouseLight-y things

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 128 Commits
.dvc		.dvc
check-tiles		check-tiles
common		common
foreground-classifiers		foreground-classifiers
freezing		freezing
landmark-matching		landmark-matching
line-fix		line-fix
rendering		rendering
sample-2022-02-01		sample-2022-02-01
stitching		stitching
tmt @ c303b07		tmt @ c303b07
.dvcignore		.dvcignore
.gitignore		.gitignore
.gitmodules		.gitmodules
adjacency_from_forest_as_named_trees.m		adjacency_from_forest_as_named_trees.m
affine_from_cpg_targets.m		affine_from_cpg_targets.m
are_md5s_the_same.m		are_md5s_the_same.m
are_paired_descriptors_close_enough.m		are_paired_descriptors_close_enough.m
bag_items_by_id.m		bag_items_by_id.m
barycentric_interpolant.m		barycentric_interpolant.m
base_name_from_file_name.m		base_name_from_file_name.m
bits_from_chunk_ijk0.m		bits_from_chunk_ijk0.m
bits_from_octree_path.m		bits_from_octree_path.m
build_full_trees_as_named_tree_mats.m		build_full_trees_as_named_tree_mats.m
build_full_trees_as_named_tree_mats_function.m		build_full_trees_as_named_tree_mats_function.m
build_raw_tile_index.m		build_raw_tile_index.m
build_raw_tile_index_for_neighborhood.m		build_raw_tile_index_for_neighborhood.m
build_tile_index_dirwalk_callback.m		build_tile_index_dirwalk_callback.m
chain_length_from_chain.m		chain_length_from_chain.m
chains_from_rooted_tree.m		chains_from_rooted_tree.m
chains_from_rooted_tree_in_place.m		chains_from_rooted_tree_in_place.m
chains_from_rooted_tree_with_id_tracking.m		chains_from_rooted_tree_with_id_tracking.m
chains_from_tree.m		chains_from_tree.m
chains_from_tree_in_place.m		chains_from_tree_in_place.m
chains_from_tree_with_id_tracking.m		chains_from_tree_with_id_tracking.m
channel_index0_as_string_from_tile_file_name.m		channel_index0_as_string_from_tile_file_name.m
chunk_bounding_box_from_bounding_box.m		chunk_bounding_box_from_bounding_box.m
chunk_ijk0_from_bits.m		chunk_ijk0_from_bits.m
chunk_ijk1s_from_octree_paths.m		chunk_ijk1s_from_octree_paths.m
clean_up_skeleton_component.m		clean_up_skeleton_component.m
clean_up_skeleton_graph.m		clean_up_skeleton_graph.m
collect_fragments_into_single_mat_file.m		collect_fragments_into_single_mat_file.m
collect_landmarks.m		collect_landmarks.m
collect_z_face_matches.m		collect_z_face_matches.m
compute_affine_landmark_match_distance.m		compute_affine_landmark_match_distance.m
compute_affine_landmark_match_error.m		compute_affine_landmark_match_error.m
compute_barycentric_landmark_match_distance.m		compute_barycentric_landmark_match_distance.m
compute_barycentric_landmark_match_error.m		compute_barycentric_landmark_match_error.m
compute_landmarks.sh		compute_landmarks.sh
compute_landmarks_for_all_tile_channels.m		compute_landmarks_for_all_tile_channels.m
compute_landmarks_for_patrick_pipeline.m		compute_landmarks_for_patrick_pipeline.m
compute_or_read_from_memo.m		compute_or_read_from_memo.m
compute_z_matches.sh		compute_z_matches.sh
compute_z_matches_for_patrick_pipeline.m		compute_z_matches_for_patrick_pipeline.m
connected_components_with_fractionation.m		connected_components_with_fractionation.m
connected_components_without_fractionation.m		connected_components_without_fractionation.m
convert_full_named_trees_as_mat_to_swc.m		convert_full_named_trees_as_mat_to_swc.m
convert_named_tree_to_jaws_coords.m		convert_named_tree_to_jaws_coords.m
convert_named_trees_to_jaws_coords.m		convert_named_trees_to_jaws_coords.m
convert_swc_array_to_jaws_coords.m		convert_swc_array_to_jaws_coords.m
convert_swc_arrays_to_jaws_coords.m		convert_swc_arrays_to_jaws_coords.m
copy_raw_tile_neighborhood.m		copy_raw_tile_neighborhood.m
copy_raw_tile_neighborhood_as_links.m		copy_raw_tile_neighborhood_as_links.m
correctTiles.m		correctTiles.m
decimate_chain.m		decimate_chain.m
decimate_chains.m		decimate_chains.m
defragment_node_ids_in_edges.m		defragment_node_ids_in_edges.m
directed_adjacency_from_edges.m		directed_adjacency_from_edges.m
directed_adjacency_from_forest_of_named_trees.m		directed_adjacency_from_forest_of_named_trees.m
directed_adjacency_from_named_tree.m		directed_adjacency_from_named_tree.m
does_file_name_end_in_dot_mj2.m		does_file_name_end_in_dot_mj2.m
does_file_name_end_in_dot_tif.m		does_file_name_end_in_dot_tif.m
does_file_name_end_in_dot_tif_and_mj2_is_missing.m		does_file_name_end_in_dot_tif_and_mj2_is_missing.m
does_file_name_match_certificate_file.m		does_file_name_match_certificate_file.m
does_file_name_not_end_in_dot_mj2.m		does_file_name_not_end_in_dot_mj2.m
does_file_name_not_end_in_dot_tif.m		does_file_name_not_end_in_dot_tif.m
does_match_channel_0_raw_tile_tif_name.m		does_match_channel_0_raw_tile_tif_name.m
does_match_raw_tile_tif_name.m		does_match_raw_tile_tif_name.m
does_match_regexp.m		does_match_regexp.m
does_md5_match.m		does_md5_match.m
does_not_match_raw_tile_tif_name.m		does_not_match_raw_tile_tif_name.m
dogDescriptor.m		dogDescriptor.m
edges_from_chains.m		edges_from_chains.m
edges_from_named_tree.m		edges_from_named_tree.m
empty_named_tree_struct.m		empty_named_tree_struct.m
extract_tiles_near_tile.m		extract_tiles_near_tile.m
figure_mip.m		figure_mip.m
figure_to_check_alignment_to_stack.m		figure_to_check_alignment_to_stack.m
file_accumulate_map_filter.m		file_accumulate_map_filter.m
file_path_from_chunk_path.m		file_path_from_chunk_path.m
file_path_from_tile_path.m		file_path_from_tile_path.m
file_relative_path_from_tile_relative_path.m		file_relative_path_from_tile_relative_path.m
find_and_batch.m		find_and_batch.m
find_and_list.m		find_and_list.m
find_and_verify.m		find_and_verify.m
find_fragments_near_neuron.m		find_fragments_near_neuron.m
find_fragments_near_neurons.m		find_fragments_near_neurons.m
find_label_and_get_value_in_acquisition_file.m		find_label_and_get_value_in_acquisition_file.m
fraction_of_xyzs_at_voxel_centers_using_erhan_conventions.m		fraction_of_xyzs_at_voxel_centers_using_erhan_conventions.m
generate_fragments.m		generate_fragments.m

About

A Matlab toolbox for doing MouseLight-y things

Activity

Custom properties

2 stars

5 watching

1 fork

Report repository

Navigation Menu

Uh oh!

About

Releases

Packages

Used by

Contributors

Languages

Uh oh!

Folders and files

Latest commit

History

About

Stars

Watchers

Forks

Releases

Packages

Used by

Contributors

Languages