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fix: emit nnUNet store_true flags as bare CLI args in nnUNetV2Runner #8968

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Merged
ericspod merged 4 commits into from
Jul 1, 2026
Merged

fix: emit nnUNet store_true flags as bare CLI args in nnUNetV2Runner #8968

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450bb59
fix: emit nnUNet store_true flags as bare args in train_single_model_…
aymuos15 Jul 1, 2026
559864f
Merge branch 'dev' into fix-8237-nnunet-continue-flag
aymuos15 Jul 1, 2026
10e588b
Merge branch 'dev' into fix-8237-nnunet-continue-flag
ericspod Jul 1, 2026
d3c93d3
refactor: drop unused store_true_flags set after merge
aymuos15 Jul 1, 2026
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11 changes: 4 additions & 7 deletions monai/apps/nnunet/nnunetv2_runner.py
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Original file line number Diff line number Diff line change
Expand Up @@ -596,16 +596,13 @@ def train_single_model_command(
if self.export_validation_probabilities:
cmd.append("--npz")

store_true_flags = {"c", "val", "use_compressed", "disable_checkpointing"}
for _key, _value in kwargs.items():
if _key in store_true_flags:
prefix = "-" if _key in {"p", "pretrained_weights"} else "--"
if isinstance(_value, bool):
if _value:
cmd.append(f"--{_key}")
elif _key in {"p", "pretrained_weights"}:
if _value:
cmd += [f"-{_key}", str(_value)]
cmd.append(f"{prefix}{_key}")
else:
cmd += [f"--{_key}", str(_value)]
cmd += [f"{prefix}{_key}", str(_value)]

cmd_str: list[str] = [str(c) for c in cmd]

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