repos_sync: keep public front-door organ tables in step with repos.yaml

[Jammy2211]

Bring the public front-door organ tables under repos_sync.py so a new organ added to repos.yaml can never silently drop out of the public docs — as Gut just did (fixed by hand on 2026-07-13).

Prompt: feature/pyautomind/public_organ_tables_repos_sync.md. Autonomy: supervised. Run launched with --auto.

Decisions settled with the maintainer

• Front-door organ set = 7 (Mind, Brain, Hands, Heart, Memory, Gut, Nerves). Nerves/PyAutoConf is category: library per ORGANISM.md but is included on the public front door via an explicit front_door: true flag. Internal AGENTS.md organism maps stay at the 6 category: organ repos (unchanged); escalating Nerves to a full organ everywhere is a separate doctrine edit if wanted later.
• The three external front-door repos are now cloned locally, so repos_sync generates/checks them in-tree (marker-block idiom), not via gh-API.

High-level plan

• Make repos.yaml the single source for the public organ copy (add front_door + public_role).
• Teach repos_sync.py to generate the organ table into the two front-door READMEs and to presence-check the hub blurb.
• Wire generate→--write, verify→--check (already run by /morning and /health); soft-skip any target not checked out.

Detailed plan

• repos.yaml: add front_door: true to PyAutoConf; add public_role: to the 7 front-door repos, seeded verbatim from the current curated public copy (so generation preserves the good text).
• scripts/repos_sync.py:
  • ORGANS_BEGIN/END = <!-- repos_sync:organs:begin/end -->.
  • public_organs(repos) = category==organ rows (manifest order) + front_door rows → 7.
  • organ_public_table(repos, *, bold) → | Organ | Repo | Role | using public_role; repo cell bold-linked (.github) or plain-linked (PyAutoScientist).
  • Targets (soft-skip when absent): .github/profile/README.md (bold), PyAutoScientist/README.md (plain).
  • --write: write_block(..., ORGANS_BEGIN, ORGANS_END, required=False) for both.
  • --check: extract_block comparison for the two tables + check_hub_blurb (every organ label present in pyautolabs.github.io/index.html).
• Insert the organs markers around the existing tables in both READMEs (one-time).
• Verify: --write produces only the intended canonicalisation; --check clean; deleting an organ row makes --check fail naming the organ+doc.

Scope / ship

Touches 3 repos → 3 PRs: PyAutoMind (repos_sync.py + repos.yaml), .github, PyAutoScientist. pyautolabs.github.io is presence-checked only (already contains all 7). Heart is not GREEN and level is supervised, so the run ends at PR-open — merges stay human.

🤖 Generated with Claude Code

[Jammy2211]

PR-open (supervised --auto, ended at PR-open — Heart not GREEN, merges stay human).

Three PRs, ship sign-off given:

• repos_sync: generate & drift-check public front-door organ tables #70 — repos_sync.py generator (public_organs, organ_public_table) + two drift checks (check_public_tables, check_hub_blurb) wired into --write/--check; repos.yaml gains public_role + front_door: true on PyAutoConf/Nerves.
• profile: mark organ table as repos_sync-generated .github#3 — org-profile organ table wrapped in repos_sync:organs markers.
• README: mark organ table as repos_sync-generated PyAutoScientist#1 — PyAutoScientist README organ table wrapped in the same markers.

Decision honoured: public front door = 7 organs incl. Nerves (via front_door flag); internal AGENTS.md maps stay the 6 category:organ repos. Gut is a native organ and is covered automatically.

Verified: repos_sync --check passes on both new checks; a new organ (or a dropped Gut) missing from any of the three docs fails --check in all three; targets soft-skip when not checked out. The one unrelated --check red is the pre-existing check_dataset_allowlist.py firewall item. No library API or user-facing script change.

Both .github and PyAutoScientist were cloned locally this session so the generator runs in-tree. Post-merge: worktree + 3 feature branches to be cleaned up.

[Jammy2211]

Merged: PyAutoMind#70 + .github#3 + PyAutoScientist#1 (squash). Public front-door organ tables are now generated & drift-checked from repos.yaml. Closing.