Mc gen path template stdize - #43

Merged

dankessler merged 57 commits into

UMPsychMethodsCore:developfrom

heffjos:mc_GenPath_Template_stdize

Jun 19, 2012

Commits on Mar 20, 2012

PreprocessFirstLevel_Central. uses mc_GenPath and added Run=Rundir{r}
Joseph Heffernan
committed
ce7bf91
Updated MVM_Central to use new mc_Gen_Path call
Joseph Heffernan
committed
e556635
Updated ExtractROI_central.m for mc_GenPath
Joseph Heffernan
committed
4c70442
Updated ExtractROI_mc_template.m for mc_GenPath.m
Joseph Heffernan
committed
a5f172c
Updated ExtractionScripts/ExtractROI for mc_GenPath
Joseph Heffernan
committed
ac7561f

Commits on Mar 21, 2012

Updated ExtractionScripts/BuildROI/ files to use mc_GenPath
Joseph Heffernan
committed
a0374dc
Updated CheckReg and CheckWarp to use mc_GenPath
Joseph Heffernan
committed
4aaae41
Updated PhysioSumary to use mc_GenPath
Joseph Heffernan
committed
55f7555
Updated Firstlevel files to be compatible with mc_GenPath
Joseph Heffernan
committed
10f0051
Made MotionSummary files compatible with mc_GenPath
Joseph Heffernan
committed
e4f88b1

Commits on Mar 29, 2012

Modified mc_Gen_Path to correctly check now
Joseph Heffernan
committed
c6c04dc
Updated mc_GenPath to properly check
Joseph Heffernan
committed
c9c3d6b
Updated mc_GenPath to properly check
Joseph Heffernan
committed
752d244
mc_GenPath now properly checks files
Joseph Heffernan
committed
2a5795e
mc_GenPath now properly checks
Joseph Heffernan
committed
301c0dc
mc_GenPath now checks properly
Joseph Heffernan
committed
924b83a
mc_GenPath now properly checks
Joseph Heffernan
committed
6543410
Updated mc_GenPath to check properly
Joseph Heffernan
committed
ad72d9a
mc_GenPath now properly checks
Joseph Heffernan
committed
0d68c04
mc_GenPath now properly checks
Joseph Heffernan
committed
1c21488

Commits on Apr 15, 2012

Fixed typos pointed out by @Mangstad
Joseph Heffernan
committed
25effb2

Commits on Apr 16, 2012

Fixed fullfile problem pointed out by Mangstad
Joseph Heffernan
committed
c2e1dbe
Removed some unnecessary comments
Joseph Heffernan
committed
75b7038
Removed unnecessary comments
Joseph Heffernan
committed
eb06881
Removed unecessary comments
Joseph Heffernan
committed
55964e3
Removed unnecessary comments
Joseph Heffernan
committed
77c4aa4
Removed unnecessary commits
Joseph Heffernan
committed
e395ba4
Removed unnecessary comments
Joseph Heffernan
committed
3026ad0
Removed unnecessary comments
Joseph Heffernan
committed
8b80cf4
Removed some white space
Joseph Heffernan
committed
db4f39f
Removed unnecesary comments
Joseph Heffernan
committed
5ab2486

Commits on Jun 5, 2012

Fixed NaN appearing in first level analysis
Joseph Heffernan
committed
3d25ff6

Commits on Jun 9, 2012

Removed unnecessary commented code when mc_GenPath was added in script
Joseph Heffernan
committed
5a1589c
Updated the bounding box in the vbm options
Joseph Heffernan
committed
f265ead

Commits on Jun 12, 2012

Added a motion regressor csv template in FirstLevel_mc_template.m
Joseph Heffernan
committed
dc9261d
Added additional comments for motion regressor csv template
Joseph Heffernan
committed
454cafb
Fixed errors found by Chandra
Joseph Heffernan
committed
db2967a
Cleaned up first level template and realized there will be a motion reg file for each subject for each run.
Joseph Heffernan
committed
09641a5
Clustered most of regressor variables together in FirstLevel_mc_template.m
Joseph Heffernan
committed
ceaac44
Fixed the NaN syntax error pointed out by Chandra.
Joseph Heffernan
committed
11b89f4
Added handling of a separate motion regressor file in the first level central.
Joseph Heffernan
committed
687f49c
Modified how regressors are handled when RegOp = 2 to consider the separate motion regressor file now
Joseph Heffernan
committed
93693e1
Some whitespace change.
Joseph Heffernan
committed
ac807af
Regressors read in from a file recognize the motion regressors, if any.
Joseph Heffernan
committed
41fbc86
Added a semi colon
Joseph Heffernan
committed
e7ac0fb
Removed unnecessary comments.
Joseph Heffernan
committed
eefe737
Moved related variable close to each other in first level template.
Joseph Heffernan
committed
da76cc2

Commits on Jun 14, 2012

Updated conditions when regressors are read from a motion regressor file.
Joseph Heffernan
committed
e86fd93
Fixed logic for when a motion regressor file is read and zero pad a contrast vector based on the motion regressor file.
Joseph Heffernan
committed
22ad7ea

Commits on Jun 15, 2012

Corrected logic for when MotRegList is read.
Joe Heffernan
committed
8e16ba5
Rearranged some white space for code reading in regressors from a regressor file.
Joe Heffernan
committed
a8eddf0
Moved where contrast vectors are zero padded if motion regressors are read in from the spm file. If zero padding is done, it will always occur before the contrasts are entered for the regressors r…
Joe Heffernan
committed
11b86f0
Rearranged some white space, and the actual run number for the run is written in the text file. Before it was writing only one number.
Joe Heffernan
committed
1d69cac
Changed OutputPathTemplate from makedir to makeparentdir. Makedir would consider the file name at the end as a directory and make it as one.
Joe Heffernan
committed
352eb2e
Changed how RegList is indexed so that it can be concatenated with other regressor names.
Joe Heffernan
committed
eb26076
Changed how the runs are numbered back to the original form so that it is compatible with PreprocessFirstLevevl_central.m
Joe Heffernan
committed
15a8e69

Commits on Jun 19, 2012

Undo all but changes to FirstLevel scripts
Joseph Heffernan
committed
ce35dc2