spikeDetect with spm8Batch implementation - #55

Merged

dankessler merged 36 commits into

UMPsychMethodsCore:developfrom

heffjos:qc_Tools

Jun 19, 2012

Commits on Mar 6, 2012

Adding the functionality of VBM8 into the workflow. Also made some modifications for error handling in the way we exit bash script. If exiting on error then we delete any shell script or matlab scr…
rcwelsh
committed
1b5ddf7
Left out vbm_part_01 shell stuff
rcwelsh
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6fcf102

Commits on Mar 11, 2012

Added VBM8 option to warpfMRI
rcwelsh
committed
dee2d69

Commits on Mar 13, 2012

Commits on Mar 15, 2012

Commits on Mar 25, 2012

Added CheckSpike folder and dSpike.m
Joseph Heffernan
committed
ced61f5

Commits on Mar 26, 2012

Improved dSpike performance
Joseph Heffernan
committed
35a9b87
Renamed some variables and added matrix support for dSpike.m
Joseph Heffernan
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46a8cf1
Cleaned up dSpike
Joseph Heffernan
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983c0ac
Added help sections to dSpike.m and QC_calcSliceVariance.m
Joseph Heffernan
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96a746d

Commits on Mar 27, 2012

Added ability to vbm8HiRes warp other images with -O flag
rcwelsh
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9bfe8c9

Commits on Apr 5, 2012

Fixed small error in help file reference for smoothfMRI
rcwelsh
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6140e54

Commits on Apr 9, 2012

Changed batchDetectSpike.m to zero mean per slice per time instead of whole brain.
Joseph Heffernan
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d728e76

Commits on Apr 10, 2012

dSpike.m now returns ajkz and results. Ajkz are the interesting metrics. Results indicates whether the function completed successfully.
Joseph Heffernan
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3f0128e
Rearranged some code to experiment with best treshold value. 10 seems like the best.
Joseph Heffernan
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ac41597

Commits on Apr 13, 2012

Added the Thres parameter to be used to detect for spikes
Joseph Heffernan
committed
4310b79

Commits on Apr 24, 2012

Hardcoded detrending when detOpt = 0, because spm_detrend is just too slow
Joseph Heffernan
committed
0d8c01b
Hardcoded detrending when detOpt = 0, because spm_detrend is just too slow
Joseph Heffernan
committed
d78194f

Commits on Apr 30, 2012

Added UMBatchDetectSpike to be used in spm8Batch. Started work on MC_CheckSpike_Template.m
Joseph Heffernan
committed
533b005
Merge remote-tracking branch 'rcwelsh/spm8Batch_VBM8_augment' into qc_Tools
Joseph Heffernan
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1fb678c
Added all files necessary for detectSpike
Joseph Heffernan
committed
2616bb3
Changed options in detectSpike to process all runs whenever it is called. Updated help options.
Joseph Heffernan
committed
eb93704
Fixed a typo, indexing problem, and formatted output to .txt file.
Joseph Heffernan
committed
8fecbdf

Commits on May 3, 2012

Corrected output file to have the correct run number in its name
Joseph Heffernan
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9d9a50e

Commits on May 10, 2012

Removed a for loop
Joseph Heffernan
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fdae264
Removed batchDetectSpike.m from the repository, becuase it was for personal use
Joseph Heffernan
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d2dd71f
Removed an unnecessary note from help message
Joseph Heffernan
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654ca1f
Threshold and detrend option is now written in the output text file
Joseph Heffernan
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9fe25fa
Added a note in spikeDetect help for where the results are written
Joseph Heffernan
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cbf57ef

Commits on May 17, 2012

Updated flag options for detect spike.
Joseph Heffernan
committed
3ce1655

Commits on Jun 14, 2012

Added UMBatchLogProcess to UMBatchDetectSpike.m
Joseph Heffernan
committed
2ce315a