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Repository-mode semantic index scans symlink root as empty #41

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@AntoineToussaint

Found first-hand in Mind production session qualification/sessions/04b-many-unit-microservices.json at immutable project commit 5096a85b2f3bf41bef53363cfe5478d5b86ac701.

All four Python code units were correctly detected and routed through the released Python agent, but GetSemanticIndex returned SEMANTIC_INDEX_STATE_NOT_ATTEMPTED / unsupported_source: no supported semantic source files were found even though the rooted units contain .py files. The arbitrary-source adapter exposes the project via a directory symlink and Core DefaultCodeServer did not traverse a symlink used as the scan root.

Generic Core fix: codefly-dev/core#197 / PR codefly-dev/core#198.

DOD: consume the released Core fix, pass the full agent suite, publish a signed release with all assets, update the CLI pin, and prove the exact 12-unit production session reports all Python units COMPLETE (or an honest file-level DEGRADED state), never false NOT_ATTEMPTED. No fixture/language logic in Mind.

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