[Security hardening] Add automated security audit workflow by PascalThuet · Pull Request #2442 · github/spec-kit

PascalThuet · 2026-05-02T06:39:31Z

Summary

Add a dedicated Security Audit workflow for dependency and static-analysis checks.
Audit committed hashed requirements on push, pull request, and manual dispatch so ordinary CI stays deterministic.
Verify committed audit requirements are refreshed when dependency inputs change, while keeping live dependency resolution for the scheduled audit across the supported Python and OS matrix.
Run Bandit for high-severity findings with a scoped baseline for the accepted shell-step B602 finding.
Pin all repository GitHub Actions to full commit SHAs.
Harden extension, preset, integration, and workflow downloads with bounded reads, strict HTTPS redirects, optional sha256 verification, bounded ZIP extraction, and source-path traversal guards.

Security context

This creates a repeatable CI baseline for dependency advisories and high-severity static-analysis issues while preserving a scheduled live-resolution signal for newly published dependency problems. It also closes similar supply-chain and archive-handling gaps found during follow-up review.

Closes #2438

Validation

git diff --check
uvx ruff check on all changed Python surfaces and tests
uv run python -m pytest tests/test_download_security.py tests/test_extensions.py tests/test_presets.py tests/integrations/test_integration_catalog.py tests/test_security_workflow.py tests/test_upgrade.py -q
uv run python -m pytest -q
uv pip compile pyproject.toml --extra test --universal --generate-hashes --quiet --no-header --output-file , compared with .github/security-audit-requirements.txt
uvx --from pip-audit==2.10.0 pip-audit --disable-pip --require-hashes -r .github/security-audit-requirements.txt --progress-spinner off
uvx --from bandit==1.9.4 bandit -r src -lll --baseline .github/bandit-baseline.json

Copilot

Pull request overview

Adds a new GitHub Actions workflow to introduce automated security checks for the Python codebase, aiming to catch dependency advisories and high-severity static-analysis findings in CI alongside the existing test/lint workflows.

Changes:

Add .github/workflows/security.yml with a dedicated Security Audit workflow.
Run pip-audit on pushes to main, pull requests, a weekly cron, and manual dispatch.
Run Bandit against src/, temporarily skipping B602 pending the shell-step hardening tracked in #2440.

Show a summary per file

File	Description
`.github/workflows/security.yml`	New CI workflow that adds dependency-audit and static-analysis jobs for the Python project.

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Files reviewed: 1/1 changed files
Comments generated: 5

mnriem

Please address Copilot feedback. If not applicable, please explain why

PascalThuet · 2026-05-05T16:46:52Z

Addressed the Copilot feedback in the latest push:

Dependency auditing now exports the locked runtime + test extra dependency set with uv export --extra test --frozen --no-emit-project, then audits the generated requirements file.
pip-audit and Bandit are pinned via uvx --from (pip-audit==2.10.0, bandit==1.9.4).
Removed the global Bandit --skip B602; the existing shell execution call sites now use targeted # nosec B602 suppressions with local context.
Added CONTRIBUTING.md security-check commands so contributors can reproduce the workflow locally.

Local validation:

uv export --quiet --extra test --frozen --format requirements.txt --no-emit-project --output-file /tmp/spec-kit-audit-requirements.txt
uvx --from pip-audit==2.10.0 pip-audit -r /tmp/spec-kit-audit-requirements.txt --progress-spinner off
uvx --from bandit==1.9.4 bandit -r src -lll
git diff --check

Results: pip-audit reported no known vulnerabilities, Bandit reported no issues, and git diff --check passed.

PascalThuet · 2026-05-05T16:49:40Z

Added automated regression coverage for the security workflow in tests/test_security_workflow.py.

The new tests statically verify that:

dependency auditing exports the locked runtime + test extra requirements before running pip-audit;
pip-audit and Bandit remain pinned via uvx --from;
Bandit does not use a global --skip B602;
CONTRIBUTING.md documents the same security commands.

Validation after this commit:

uv run python -m pytest tests/test_security_workflow.py -q
uv export --quiet --extra test --frozen --format requirements.txt --no-emit-project --output-file /tmp/spec-kit-audit-requirements.txt
uvx --from pip-audit==2.10.0 pip-audit -r /tmp/spec-kit-audit-requirements.txt --progress-spinner off
uvx --from bandit==1.9.4 bandit -r src -lll
git diff --check

All passed locally.

Copilot

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Comments suppressed due to low confidence (1)

src/specify_cli/init.py:414

This second # nosec B602 suppresses Bandit for the non-capturing branch as well, so neither path through run_command will ever raise B602 again. If the intent is only to defer the current finding until #2440, the skip needs to stay in the workflow/configuration layer rather than permanently muting this call site in source.

            # shell=True is only available to callers that opt in explicitly.
            subprocess.run(cmd, check=check_return, shell=shell)  # nosec B602

Files reviewed: 5/5 changed files
Comments generated: 5

mnriem · 2026-05-05T18:04:30Z

Please address Copilot feedback. If not applicable, please explain why. Note the shell step should indeed be ignored

mnriem

See comments above

PascalThuet · 2026-05-05T20:18:16Z

Addressed the follow-up review in e1e8051:

Removed --frozen from the dependency export because this repo intentionally does not commit uv.lock; the workflow and contributor docs now use the same clean-checkout-safe command.
Replaced source-level # nosec B602 suppressions with a CI-level Bandit baseline at .github/bandit-baseline.json.
Kept that baseline scoped to exactly one accepted finding: B602 in ShellStep, matching the maintainer note that the shell step should be ignored.
Hardened the generic run_command helper so shell=True is rejected instead of suppressed, which removes the similar non-shell-step B602 sink entirely.
Expanded tests/test_security_workflow.py to catch these regressions: no lockfile flags, pinned tools, no global --skip B602, one-entry Bandit baseline, no source # nosec B602, docs in sync, and run_command(shell=True) rejection.

Validation:

uv export --quiet --extra test --format requirements.txt --no-emit-project --output-file /tmp/spec-kit-audit-requirements.txt
uvx --from pip-audit==2.10.0 pip-audit -r /tmp/spec-kit-audit-requirements.txt --progress-spinner off
uvx --from bandit==1.9.4 bandit -r src -lll --baseline .github/bandit-baseline.json
uv run python -m pytest tests/test_security_workflow.py tests/test_workflows.py -q
uvx ruff check src/
git diff --check

I also verified the uv export command in a temporary clean directory without uv.lock; it succeeds before running the audit.

PascalThuet · 2026-05-05T20:27:09Z

One more small cleanup after re-review: pushed 6f1da27 to use uv pip compile pyproject.toml --extra test for the audit requirements instead of uv export.

Reason: it still audits the runtime + test extra dependency set, but it avoids both requiring and generating a project uv.lock, which makes the CI and CONTRIBUTING.md command cleaner for this repo.

Revalidated locally:

uv pip compile pyproject.toml --extra test --quiet --output-file /tmp/spec-kit-audit-requirements.txt
uvx --from pip-audit==2.10.0 pip-audit -r /tmp/spec-kit-audit-requirements.txt --progress-spinner off
uvx --from bandit==1.9.4 bandit -r src -lll --baseline .github/bandit-baseline.json
uv run python -m pytest tests/test_security_workflow.py -q
git diff --check

All passed.

Copilot

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Comments suppressed due to low confidence (1)

tests/test_security_workflow.py:91

Bandit doesn't require the exact literal # nosec B602 to suppress this finding; plain # nosec, #nosec, and multi-ID forms also disable B602. This check leaves those suppression paths untested, so a future source-level bypass can slip in without failing CI.

        )

    def test_b602_is_not_suppressed_in_source(self):
        source_text = "\n".join(
            path.read_text(encoding="utf-8")
            for path in (REPO_ROOT / "src").rglob("*.py")
        )

Files reviewed: 5/5 changed files
Comments generated: 3

mnriem · 2026-05-05T20:34:15Z

Please address Copilot feedback

PascalThuet · 2026-05-05T20:45:51Z

Addressed the latest Copilot review in 129d19e:

Dependency audit now runs on the supported OS/Python matrix: ubuntu-latest and windows-latest across Python 3.11, 3.12, and 3.13.
The requirements output path in CI now uses ${{ runner.temp }}, and the contributor docs use a relative spec-kit-audit-requirements.txt path instead of /tmp, so the commands are Windows-compatible.
The security workflow regression test now verifies GitHub Actions are pinned to full 40-character commit SHAs.
The Bandit suppression guard now catches any # nosec form, not only the exact # nosec B602 spelling.
The dependency audit now compiles hashed requirements and runs pip-audit --disable-pip --require-hashes, avoiding a second pip resolution step.

Validation:

uv run python -m pytest tests/test_security_workflow.py -q
uv pip compile pyproject.toml --extra test --python-version 3.11 --generate-hashes --quiet --output-file /tmp/spec-kit-audit-py311.txt
uv pip compile pyproject.toml --extra test --python-version 3.12 --generate-hashes --quiet --output-file /tmp/spec-kit-audit-py312.txt
uv pip compile pyproject.toml --extra test --python-version 3.13 --generate-hashes --quiet --output-file /tmp/spec-kit-audit-py313.txt
uvx --from pip-audit==2.10.0 pip-audit --disable-pip --require-hashes -r /tmp/spec-kit-audit-py311.txt --progress-spinner off
uvx --from pip-audit==2.10.0 pip-audit --disable-pip --require-hashes -r /tmp/spec-kit-audit-py312.txt --progress-spinner off
uvx --from pip-audit==2.10.0 pip-audit --disable-pip --require-hashes -r /tmp/spec-kit-audit-py313.txt --progress-spinner off
uvx --from bandit==1.9.4 bandit -r src -lll --baseline .github/bandit-baseline.json
git diff --check

All passed locally.

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Files reviewed: 5/5 changed files
Comments generated: 5

mnriem

Please address Copilot feedback

PascalThuet · 2026-05-05T21:51:54Z

Addressed the latest Copilot review round in commit aa02062:

Push/PR/manual dependency audits now use committed hashed requirements at .github/security-audit-requirements.txt for deterministic CI.
Scheduled audits still perform live resolution across the supported Python/OS matrix.
CONTRIBUTING now runs pip-audit from the committed requirements file and documents how to refresh it without creating a root-level artifact.
The security workflow tests now assert triggers, deterministic audit behavior, action SHA pins, hashed committed requirements, and the absence of run_command(shell=...).
PR validation notes now match the Bandit baseline command used by CI.

Local validation passed:

git diff --check
uv run python -m pytest tests/test_security_workflow.py -q
uv run python -m pytest -q
uvx ruff check src tests/test_security_workflow.py
uvx --from pip-audit==2.10.0 pip-audit --disable-pip --require-hashes -r .github/security-audit-requirements.txt --progress-spinner off
uvx --from bandit==1.9.4 bandit -r src -lll --baseline .github/bandit-baseline.json

The new GitHub workflow runs are currently waiting for fork PR approval (action_required).

Copilot

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Files reviewed: 6/6 changed files
Comments generated: 2

Six items from the new Copilot pass. Three were latent bugs in the guardrails added by earlier commits, two are documentation/wording, one is parity coverage. Bugs - security.yml: the MEDIUM Bandit informational pass ran without --baseline, so the whitelisted HIGH B602 finding re-fired there on every run, turning the job summary into a permanent warning. Apply the same baseline to both passes; medium-only NEW findings now surface, as intended. - security.yml: the summary step ran with if: always() but the MEDIUM pass has the default if: success() — when the blocking HIGH step fails, the MEDIUM pass is skipped (outcome=skipped, not failure) and the summary wrote "✅ clean" anyway. Switch to a case statement that handles failure/success/skipped distinctly (⚠️ / ✅ / ⏭️). - check_bandit_baseline.py and check_secrets_baseline.py used `git show <head_ref>:` on both sides, so an unreadable/unfetched head ref returned empty results and the diff computed 0 new identities → fail-open. Read the head side from the working tree instead (CI is checked out at the PR head), fail-closed when the file is missing, and SystemExit on corrupt JSON. The base side keeps the lenient JSONDecodeError fallback because that's historical state we can't change. Wording - security.yml + CONTRIBUTING.md: both mentioned `# nosec` as a suppression mechanism, but tests/test_security_workflow.py:: test_bandit_nosec_is_not_suppressed_in_source explicitly forbids `# nosec` under src/. Replace with the actually-supported paths (bandit baseline for HIGH findings, `# noqa: S6xx` for ruff subprocess-shell rules) and flag the forbidden-comment policy. Parity coverage - tests/test_security_workflow.py: three new tests for the secret-scan job mirroring the dependency-audit / static-analysis coverage — detect-secrets-hook command, baseline path, excluded paths, growth gate env wiring (BASE only, no HEAD env), and fetch-depth: 0. - tests/test_workflows.py: regression test that WorkflowCatalog._fetch_single_catalog routes through read_response_limited with error_type=WorkflowCatalogError and label "workflow catalog". Mirrors TestBoundedRead for _fetch_latest_ release_tag and the equivalent test in test_integration_catalog.py. - tests/test_baseline_gates.py: two new fail-closed cases (head missing in working tree, head corrupt in working tree); drop the now-unused head_sha returns and the head env var from GateHandle.run. Note: Copilot also flagged "no tests on baseline gate scripts" — those tests already shipped in tests/test_baseline_gates.py (commit 2fd8071, posted before the review). Updated here with the new fail-closed cases. Tests: 3017 passed (was 3009).

- read_response_limited: read in a loop until EOF or one byte past the limit instead of a single read(max_bytes + 1). A server using chunked transfer encoding can return fewer bytes per read() than requested while streaming more than max_bytes total, defeating the single-read bound. Add regression tests for the short-read and within-limit paths. - _download_security: annotate _raise / _raise_from as NoReturn so type checkers treat call sites as unreachable. - Extract the duplicated is_https_or_localhost_http redirect-safety predicate into _download_security and import it from both _github_http and authentication/http so the rule lives in one place. - azure_devops: stop catching broad ValueError/KeyError around token acquisition; give the bounded read a dedicated _TokenResponseTooLarge type and catch only URLError, OSError, JSONDecodeError, and that type so unrelated programming errors still surface. - tests: make response mocks faithful streams (advancing cursor, b"" at EOF) so the bounded read loop terminates as it would against a real http.client.HTTPResponse. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

- __init__.py preset/extension URL installs: give read_response_limited a domain error_type (PresetError / ExtensionError) and catch that instead of a blanket ValueError, so an oversized body is reported cleanly while unrelated ValueErrors surface as real errors. The extension catch now also covers install_from_zip's ValidationError (an ExtensionError). - _utils.run_command: rewrite the misleading docstring — shell=False is the only honoured mode; shell=True is rejected with ValueError, the parameter is retained only so existing keyword callers don't hit TypeError. - _download_security: document that the loopback allowance is an exact-string match (not an IP-range check), that read_response_limited's max_bytes default is the 50 MiB ceiling (callers with tighter budgets should pass an explicit value), and how _safe_zip_name handles single trailing-slash directory markers vs malformed empty segments. - authentication/http: comment the empty-hosts _StripAuthOnRedirect use as the HTTPS-downgrade guard on the unauthenticated path. - check_security_requirements: document the HEAD^ fallback failing safe (audit anyway) on shallow / single-commit checkouts. - security.yml: document the universal committed snapshot vs per-Python scheduled compile distinction. - tests: add a regression test that a symlink alongside benign members is rejected with no partial extraction to disk. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

Audit follow-up to the download-hardening work, closing similar cases within the scope of this PR: - Add read_zip_member_limited() and use it for the inline extension.yml read in the extension *update* path (__init__.py). That read happened before install_from_zip()'s safe_extract_zip(), so a raw zf.open().read() bypassed the per-member size bound: a manifest declaring a huge file_size (few KB compressed, gigabytes uncompressed) would be fully loaded by yaml.safe_load. The helper rejects on declared size and reads bounded. - Route the Azure DevOps OAuth token request through a strict-redirect opener so a 307/308 redirect cannot forward the client_secret POST body to a non-HTTPS, non-loopback host. - Tests for the new helper and the updated ADO opener path. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

…P bytes Addresses the Copilot review on PR github#2442 and the same pattern elsewhere. - safe_extract_zip(): track the cumulative bytes actually written and fail past max_total_bytes, so the total-size bound holds even if member headers understate file_size (the declared-total check alone could be evaded). Mirrors the existing per-member written guard — defense-in-depth consistency. - Pass an explicit max_bytes to read_response_limited() at every JSON call site instead of inheriting the 50 MiB archive/payload default: * MAX_JSON_METADATA_BYTES (1 MiB): Azure AD token, GitHub release metadata, and the existing latest-release fetch (migrated off an inline literal). * MAX_JSON_CATALOG_BYTES (8 MiB): preset, extension, workflow and integration catalog fetches. Binary/archive downloads keep the 50 MiB ceiling. Both ceilings are centralized as documented constants in _download_security.py. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

- pin actions/checkout to the repo-wide df4cb1c (v6.0.3) in lint.yml and security.yml - replace the ad-hoc ip_address loopback checks in the workflow add URL/catalog flows with the shared is_https_or_localhost_http predicate, so HTTP-on-loopback rules match the redirect handler - drop the empty member name from the zip dot-segment test: zipfile cannot write such an entry, the case crashed in the test itself

…gates - align the setup-uv pin in security.yml with test.yml (v8.2.0) - use is_https_or_localhost_http for the preset_add/extension_add URL checks and pass strict_redirects=True to the latest-release fetch and the release-asset resolver call sites - baseline gate scripts fail closed on unresolvable refs and git read errors instead of treating them as "baseline did not exist"; the security workflow re-runs on labeled/unlabeled so the ack label can turn the gate green without a push - regenerate the bandit baseline against HEAD (two entries referenced removed code, one had drifted); track baseline entries by file+test_id in tests so line drift no longer breaks them - raise ZIP size-limit errors outside the broad except in safe_extract_zip so an error_type subclassing OSError/RuntimeError cannot re-wrap them - tests: drop two redirect tests duplicated from test_authentication, move the downgrade test next to its siblings, assert the workflow catalog max_bytes, route OpenerDirector.open through urlopen in the modules that patch urlopen, add set -euo pipefail to the secret scan, misc cleanup (unused helper, redundant imports, EOF-less fake read)

is_https_or_localhost_http allows HTTP for localhost, 127.0.0.1 and ::1; the user-facing messages and the open_url docstring only said localhost.

The non-HTTPS redirect rejection in _StripAuthOnRedirect applies to every authenticated attempt regardless of strict_redirects; the flag only extends the same guard to the unauthenticated fallback. Document both guards on the class and correct the open_url docstring, which previously gated the whole scheme restriction under strict_redirects.

A URL without a hostname (e.g. https:///x) has no real target; reject it regardless of scheme. Folds main's hostless-HTTPS guard into the shared predicate so every download/redirect call site benefits.

mnriem · 2026-06-22T12:26:22Z

Can we split this into smaller dedicated PRs. This has been going a long time and the scope of being able to review it properly is getting too large. Thanks!

Assisted-by: Codex (model: GPT-5, autonomous)

github-actions · 2026-09-11T00:49:16Z

This pull request has been automatically marked as stale because it has not had any activity for 60 days. It will be closed in 30 days if no further activity occurs.

PascalThuet marked this pull request as ready for review May 2, 2026 06:45

PascalThuet requested a review from mnriem as a code owner May 2, 2026 06:45

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PascalThuet and others added 21 commits June 20, 2026 01:19

ci(security): refresh audit baselines

158f737

fix: address copilot security review follow-up

6b397df

fix: wrap unsafe zip extraction errors

3d588f4

fix: redact secrets baseline hash logs

932def4

fix: keep secrets baseline hashes out of repr

6054501

fix: error messages and docstring name the exact loopback hosts

d33b000

is_https_or_localhost_http allows HTTP for localhost, 127.0.0.1 and ::1; the user-facing messages and the open_url docstring only said localhost.

harden: reject hostless URLs in is_https_or_localhost_http

f869b22

A URL without a hostname (e.g. https:///x) has no real target; reject it regardless of scheme. Folds main's hostless-HTTPS guard into the shared predicate so every download/redirect call site benefits.

fix(workflows): reject hostless catalog URLs during fetch

840043d

docs(cli): clarify host requirement for URL validation

1f8b508

fix: stabilize security rebase follow-ups

bba929d

fix: address security audit follow-ups

23723bf

fix: enforce strict redirects for catalog downloads

701b2c7

fix(security): refresh audit baseline after rebase

4e5bc51

fix: handle normalized ZIP directory entries

2c2d979

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