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Extending DPL input handling and message caching related to [O2 1325] #7110

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ktf merged 2 commits into
AliceO2Group:devfrom
matthiasrichter:dev-dpl-message-model
Nov 23, 2021
Merged

Extending DPL input handling and message caching related to [O2 1325] #7110
ktf merged 2 commits into
AliceO2Group:devfrom
matthiasrichter:dev-dpl-message-model

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@matthiasrichter

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This is a prototype which also will allow with a few more changes to activate support for an updated O2 message model where split payloads can be transferred in a sequence with one preceding data header.

Has to be finally activated in DataProcessingDevice together with a workflow test.

For using this in the workflows together with Data Distribution, also the raw proxy needs to be extended, and for that a better encapsulation of the message model is in development based on the outcome of the prototype test.

@matthiasrichter matthiasrichter requested a review from a team as a code owner September 23, 2021 21:33
Comment thread Framework/Core/include/Framework/PartRef.h Outdated
@matthiasrichter

matthiasrichter commented Oct 7, 2021

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I have changed MessageSet to keep one vector of messages and an index to access the different parts. PartRef becomes almost obsolete, there is one dependencies for the messages created by DPL, like e.g. timers. This makes the DataRelayer much faster for the split parts payloads.

from o2-bench-framework-benchmark-DataRelayer

Run on (8 X 3400 MHz CPU s)
2021-10-07 13:56:35
---------------------------------------------------------------
Benchmark                        Time           CPU Iterations
---------------------------------------------------------------
BM_RelayMessageCreation        192 ns        192 ns    3641912
BM_RelaySingleSlot             926 ns        926 ns     727922
BM_RelayMultipleSlots          996 ns        996 ns     692755
BM_RelayMultipleRoutes        1967 ns       1967 ns     354810
BM_RelaySplitParts            1533 ns       1527 ns     489359

EDIT Nov 22: adding the benchmark result for the final version

Run on (8 X 3400 MHz CPU s)
2021-11-22 22:33:46
---------------------------------------------------------------
Benchmark                        Time           CPU Iterations
---------------------------------------------------------------
BM_RelayMessageCreation        197 ns        197 ns    3619241
BM_RelaySingleSlot             970 ns        970 ns     722423
BM_RelayMultipleSlots         1000 ns       1000 ns     696814
BM_RelayMultipleRoutes        1999 ns       1999 ns     349712
BM_RelaySplitParts            1725 ns       1715 ns     453292

Compared to the original implementation

Run on (8 X 3400 MHz CPU s)
2021-10-07 13:58:45
---------------------------------------------------------------
Benchmark                        Time           CPU Iterations
---------------------------------------------------------------
BM_RelayMessageCreation        192 ns        192 ns    3557891
BM_RelaySingleSlot             915 ns        915 ns     747876
BM_RelayMultipleSlots          974 ns        974 ns     697222
BM_RelayMultipleRoutes        1851 ns       1851 ns     379642
BM_RelaySplitParts            4558 ns       4160 ns     188960

The first draft of this PR with the message vector inside PartRef was even slower (expectedly).

Also the DataProcessingDevice is in principle ready to handle the new data format, but I need to finish off the unit test.

@matthiasrichter matthiasrichter force-pushed the dev-dpl-message-model branch 3 times, most recently from 3db9672 to 69d805b Compare October 13, 2021 10:29
@matthiasrichter

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@ktf I need to find out whats wrong with the unit test in the macos build, lets see if this is a problem also on the other CIs, then need to find out why its working on my Ubuntu installation. But in general the code in DataProcessingDevice and DataRelayer is ready.

@alibuild

alibuild commented Nov 2, 2021

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Error while checking build/O2/o2-dataflow-cs8 for e284c1bcdfde4f60b9bfdb8a1e7d0866ada88363 at 2021-11-03 09:43:

sw/BUILD/O2-latest/log
      Start  98: test_Framework_test_SimpleStatefulProcessing01
84/98 Test  #98: test_Framework_test_SimpleStatefulProcessing01 ........   Passed    0.59 sec
      Start  99: test_Framework_test_SimpleStringProcessing
85/98 Test  #99: test_Framework_test_SimpleStringProcessing ............   Passed    0.56 sec
      Start 100: test_Framework_test_SimpleTimer
86/98 Test #100: test_Framework_test_SimpleTimer .......................   Passed    1.53 sec
      Start 101: test_Framework_test_SimpleWildcard
87/98 Test #101: test_Framework_test_SimpleWildcard ....................   Passed    1.67 sec
      Start 102: test_Framework_test_SimpleWildcard02
88/98 Test #102: test_Framework_test_SimpleWildcard02 ..................   Passed    1.74 sec
      Start 103: test_Framework_test_SingleDataSource
89/98 Test #103: test_Framework_test_SingleDataSource ..................   Passed    1.53 sec
      Start 104: test_Framework_test_Task
90/98 Test #104: test_Framework_test_Task ..............................   Passed    0.73 sec
      Start 105: test_Framework_test_ExternalFairMQDeviceWorkflow
91/98 Test #105: test_Framework_test_ExternalFairMQDeviceWorkflow ......   Passed    2.40 sec
      Start 106: test_Framework_test_VariablePayloadSequenceWorkflow
92/98 Test #106: test_Framework_test_VariablePayloadSequenceWorkflow ...   Passed    1.19 sec
      Start 107: test_Framework_test_ProcessorOptions
93/98 Test #107: test_Framework_test_ProcessorOptions ..................   Passed    0.70 sec
      Start 116: test_Framework_benchmark_RawParser
94/98 Test #116: test_Framework_benchmark_RawParser ....................   Passed   12.68 sec
      Start 117: test_Framework_benchmark_DPLRawPageSequencer
95/98 Test #117: test_Framework_benchmark_DPLRawPageSequencer ..........   Passed    7.33 sec
      Start 118: test_Framework_test_CustomGUIGL
96/98 Test #118: test_Framework_test_CustomGUIGL .......................***Not Run (Disabled)   0.00 sec
      Start 119: test_Framework_test_CustomGUISokol
97/98 Test #119: test_Framework_test_CustomGUISokol ....................***Not Run (Disabled)   0.00 sec
      Start 120: test_Framework_test_SimpleTracksED
98/98 Test #120: test_Framework_test_SimpleTracksED ....................***Not Run (Disabled)   0.00 sec

100% tests passed, 0 tests failed out of 93

Label Time Summary:
benchmark    =  20.01 sec*proc (2 tests)
dplutils     =  20.01 sec*proc (2 tests)
framework    =  55.46 sec*proc (89 tests)
workflow     =  38.57 sec*proc (26 tests)

Total Test time (real) =  75.71 sec

The following tests did not run:
	 85 - test_Framework_test_BoostSerializedProcessing (Disabled)
	 88 - test_Framework_test_DanglingInputs (Disabled)
	118 - test_Framework_test_CustomGUIGL (Disabled)
	119 - test_Framework_test_CustomGUISokol (Disabled)
	120 - test_Framework_test_SimpleTracksED (Disabled)
+ set +x
+ [[ ! -n '' ]]

Full log here.

@alibuild

alibuild commented Nov 2, 2021

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Error while checking build/O2/o2-cs8 for e284c1bcdfde4f60b9bfdb8a1e7d0866ada88363 at 2021-11-03 04:50:

sw/BUILD/O2-latest/log
      Start  98: test_Framework_test_SimpleStatefulProcessing01
84/98 Test  #98: test_Framework_test_SimpleStatefulProcessing01 ........   Passed    0.59 sec
      Start  99: test_Framework_test_SimpleStringProcessing
85/98 Test  #99: test_Framework_test_SimpleStringProcessing ............   Passed    0.69 sec
      Start 100: test_Framework_test_SimpleTimer
86/98 Test #100: test_Framework_test_SimpleTimer .......................   Passed    1.59 sec
      Start 101: test_Framework_test_SimpleWildcard
87/98 Test #101: test_Framework_test_SimpleWildcard ....................   Passed    2.40 sec
      Start 102: test_Framework_test_SimpleWildcard02
88/98 Test #102: test_Framework_test_SimpleWildcard02 ..................   Passed    2.00 sec
      Start 103: test_Framework_test_SingleDataSource
89/98 Test #103: test_Framework_test_SingleDataSource ..................   Passed    1.62 sec
      Start 104: test_Framework_test_Task
90/98 Test #104: test_Framework_test_Task ..............................   Passed    0.77 sec
      Start 105: test_Framework_test_ExternalFairMQDeviceWorkflow
91/98 Test #105: test_Framework_test_ExternalFairMQDeviceWorkflow ......   Passed    2.20 sec
      Start 106: test_Framework_test_VariablePayloadSequenceWorkflow
92/98 Test #106: test_Framework_test_VariablePayloadSequenceWorkflow ...   Passed    1.19 sec
      Start 107: test_Framework_test_ProcessorOptions
93/98 Test #107: test_Framework_test_ProcessorOptions ..................   Passed    0.60 sec
      Start 116: test_Framework_benchmark_RawParser
94/98 Test #116: test_Framework_benchmark_RawParser ....................   Passed   12.67 sec
      Start 117: test_Framework_benchmark_DPLRawPageSequencer
95/98 Test #117: test_Framework_benchmark_DPLRawPageSequencer ..........   Passed    6.95 sec
      Start 118: test_Framework_test_CustomGUIGL
96/98 Test #118: test_Framework_test_CustomGUIGL .......................***Not Run (Disabled)   0.00 sec
      Start 119: test_Framework_test_CustomGUISokol
97/98 Test #119: test_Framework_test_CustomGUISokol ....................***Not Run (Disabled)   0.00 sec
      Start 120: test_Framework_test_SimpleTracksED
98/98 Test #120: test_Framework_test_SimpleTracksED ....................***Not Run (Disabled)   0.00 sec

100% tests passed, 0 tests failed out of 93

Label Time Summary:
benchmark    =  19.61 sec*proc (2 tests)
dplutils     =  19.61 sec*proc (2 tests)
framework    =  67.41 sec*proc (89 tests)
workflow     =  41.99 sec*proc (26 tests)

Total Test time (real) =  87.49 sec

The following tests did not run:
	 85 - test_Framework_test_BoostSerializedProcessing (Disabled)
	 88 - test_Framework_test_DanglingInputs (Disabled)
	118 - test_Framework_test_CustomGUIGL (Disabled)
	119 - test_Framework_test_CustomGUISokol (Disabled)
	120 - test_Framework_test_SimpleTracksED (Disabled)
+ set +x
+ [[ ! -n '' ]]

Full log here.

@matthiasrichter matthiasrichter force-pushed the dev-dpl-message-model branch 2 times, most recently from 3231b1c to 26a0daf Compare November 19, 2021 07:18
@matthiasrichter

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To isolate a problem with a unit test in QualityControl, most of the changes have been committed and merged in separate PRs: #7376, #7493, #7530, #7533, #7558

Comment thread Framework/Core/src/DataProcessingDevice.cxx Outdated
This is supporting an upcoming extension of the O2 data model to allow
not only header-payload pairs but also sequences of payloads preceded
by a single header message. Such a sequence can be indicated by setting
splitPayloadIndex == splitpayloadParts with splitpayloadParts > 1.
A change in the version of DataHeader will be discussed, although there
is no change in the members of the header.

There is no change on the InputRecord API, only the payload size of the
current payload is provided in the DataRef object. It needs to be discussed,
which payload size is going to be provided in the data header in case of
a sequence with multiple payloads.

Changes alongside (most of them meanwhile moved to separate commits):
- make MessageSet the owner of FairMQMessage objects in a linear vector,
  enhances performance also for split payload sequences in header-paiload
  format
- generalizing DataRelayer to relay array of messages
- storing the payload message size in the DataRef

Extending and cleaning up DataRelayer test and benchmark
- allocating header stack through transport allocator and avoiding copy
- adding test for split parts in the header-payload scheme
- adding test for split parts in payloads sequence scheme

During the development a performance regression has been observed when
using o2::pmr::getMessage, needs to be investigated.
Using e.g. RawDeviceService const& in the init callback leads to an exception which
is difficult to understand and it comes from the adaptStateful converters
(_ZNK2o29framework15ServiceRegistry3getEjmNS0_11ServiceKindEPKc+0x2b9)[0x56376fa3f8b1]
@ktf

ktf commented Nov 23, 2021

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The error is:

/sw/slc7_x86-64/FairRoot/v18.4.2-46/lib
Info in <TUnixSystem::ACLiC>: creating shared library /sw/BUILD/7b17cc866b7721c89d903ad45c0e2c405507adeb/O2/compiled_macros//sw/SOURCES/O2/7110-slc7_x86-64/0/GPU/TPCFastTransformation/macro/fastTransformQA_C.so
/sw/slc7_x86-64/GCC-Toolchain/v10.2.0-alice2-4/bin/../lib/gcc/x86_64-unknown-linux-gnu/10.2.0/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot open output file /sw/BUILD/7b17cc866b7721c89d903ad45c0e2c405507adeb/O2/compiled_macros//sw/SOURCES/O2/7110-slc7_x86-64/0/GPU/TPCFastTransformation/macro/fastTransformQA_C.so: No such file or directory
collect2: error: ld returned 1 exit status
Error in <ACLiC>: Executing 'cd "/sw/BUILD/7b17cc866b7721c89d903ad45c0e2c405507adeb/O2/compiled_macros" ; c++ -fPIC -c -O3 -std=c++17 -Wno-implicit-fallthrough -Wno-noexcept-type -pipe -W -Woverloaded-virtual -fsigned-char -pthread  -I$ROOTSYS/include -I"/sw/slc7_x86-64/pythia/v8304-21/include" -I"/sw/slc7_x86-64/ms_gsl/3.1.0-10/include" -I"/sw/slc7_x86-64/Vc/1.4.1-74/include" -I"/sw/slc7_x86-64/FairRoot/v18.4.2-46/include" -I"/sw/slc7_x86-64/FairMQ/v1.4.43-3/include/fairmq" -I"/sw/slc7_x86-64/asio/v1.19.1-4/include" -I"/sw/slc7_x86-64/FairLogger/v1.10.2-1/include" -I"/sw/slc7_x86-64/fmt/8.0.1-1/include" -I"/sw/slc7_x86-64/GEANT3/v3-7-77/include/TGeant3" -I"/sw/slc7_x86-64/GEANT4_VMC/v5-3-83/include/g4root" -I"/sw/slc7_x86-64/GEANT4_VMC/v5-3-83/include/geant4vmc" -I"/sw/slc7_x86-64/GEANT4_VMC/v5-3-83/include/mtroot" -I"/sw/slc7_x86-64/GEANT4/v10.7.2-7/include" -I"/sw/slc7_x86-64/GEANT4/v10.7.2-7/include/Geant4" -I"/sw/slc7_x86-64/boost/v1.75.0-43/include" -I"/sw/slc7_x86-64/JAliEn-ROOT/0.6.6-84/include" -I"/sw/BUILD/7b17cc866b7721c89d903ad45c0e2c405507adeb/O2/stage/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/GPU/TPCFastTransformation" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/GPU/TPCFastTransformation/devtools" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/GPU/Common" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Framework/Logger/include" -I"/sw/slc7_x86-64/fmt/8.0.1-1/include" -I"/sw/slc7_x86-64/FairLogger/v1.10.2-1/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/GPU/Utils" -I"/sw/slc7_x86-64/ROOT/v6-24-06-37/include" -I"/sw/slc7_x86-64/Vc/1.4.1-74/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/DataFormats/Detectors/TPC/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/DataFormats/simulation/include" -I"/sw/slc7_x86-64/ms_gsl/3.1.0-10/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/DataFormats/Detectors/Common/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Common/MathUtils/include" -I"/sw/slc7_x86-64/FairRoot/v18.4.2-46/include" -I"/sw/slc7_x86-64/arrow/v5.0.0-alice3-7/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Common/Constants/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/DataFormats/Headers/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/DataFormats/MemoryResources/include" -I"/sw/slc7_x86-64/FairMQ/v1.4.43-3/include/fairmq" -I"/sw/slc7_x86-64/FairMQ/v1.4.43-3/include" -I"/sw/slc7_x86-64/boost/v1.75.0-43/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Utilities/rANS/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Common/Utils/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/DataFormats/common/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Detectors/Base/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/DataFormats/Reconstruction/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Common/Field/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Framework/Core/include" -I"/sw/slc7_x86-64/Common-O2/v1.6.0-28/include" -I"/sw/slc7_x86-64/Configuration/v2.6.3-5/include" -I"/sw/slc7_x86-64/libInfoLogger/v2.4.1-1/include" -I"/sw/slc7_x86-64/Monitoring/v3.9.0-1/include" -I"/sw/slc7_x86-64/curl/7.70.0-38/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/CCDB/include" -I"/sw/slc7_x86-64/libjalienO2/0.1.3-11/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Framework/Foundation/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Framework/Foundation/3rdparty/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Utilities/PCG/include" -I"/sw/slc7_x86-64/RapidJSON/v1.1.0-alice2-19/include" -I"/sw/slc7_x86-64/libuv/v1.40.0-14/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/DataFormats/Parameters/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Common/Types/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Common/SimConfig/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Algorithm/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Detectors/TPC/simulation/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Detectors/TPC/base/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Detectors/Raw/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Detectors/TPC/spacecharge/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/Detectors/TPC/reconstruction/include" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/GPU/GPUTracking/Definitions" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/GPU/GPUTracking/DataTypes" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/GPU/GPUTracking/Interface" -I"/sw/SOURCES/O2/7110-slc7_x86-64/0/GPU/GPUTracking" -I"/sw/slc7_x86-64/ROOT/v6-24-06-37/etc/" -I"/sw/slc7_x86-64/ROOT/v6-24-06-37/etc//cling" -I"/sw/slc7_x86-64/ROOT/v6-24-06-37/include/"   -D__ACLIC__ "/sw/BUILD/7b17cc866b7721c89d903ad45c0e2c405507adeb/O2/compiled_macros/fastTransformQA_C_ACLiC_dict.cxx" ; c++ -O3 "/sw/BUILD/7b17cc866b7721c89d903ad45c0e2c405507adeb/O2/compiled_macros/fastTransformQA_C_ACLiC_dict.o" -shared   "/lib64/libdl.so" "/lib64/libc.so" "/sw/slc7_x86-64/GCC-Toolchain/v10.2.0-alice2-4/lib64/libgcc_s.so" "/lib64/libm.so" "/sw/slc7_x86-64/GCC-Toolchain/v10.2.0-alice2-4/lib64/libstdc++.so" "/sw/slc7_x86-64/ROOT/v6-24-06-37/lib/libRint.so.6.24" "/sw/slc7_x86-64/ROOT/v6-24-06-37/lib/libCore.so.6.24" "/lib64/libpthread.so.0" "/sw/slc7_x86-64/AliEn-Runtime/v2-19-le-105/lib/libz.so.1" "/lib64/libnss_files.so.2" "/sw/slc7_x86-64/ROOT/v6-24-06-37/lib/libRIO.so" "/sw/slc7_x86-64/ROOT/v6-24-06-37/lib/libThread.so.6.24" "/sw/slc7_x86-64/ROOT/v6-24-06-37/lib/libtbb.so.2" "/lib64/librt.so.1" "/sw/slc7_x86-64/ROOT/v6-24-06-37/lib/libCling.so" "/lib64/libtinfo.so.5" "/usr/lib64/ld-2.17.so" "/sw/slc7_x86-64/ROOT/v6-24-06-37/lib/libMathCore.so.6.24.06" "/sw/slc7_x86-64/ROOT/v6-24-06-37/lib/libImt.so.6.24" "/sw/slc7_x86-64/ROOT/v6-24-06-37/lib/libMultiProc.so.6.24" "/sw/slc7_x86-64/ROOT/v6-24-06-37/lib/libNet.so.6.24" "/sw/slc7_x86-64/AliEn-Runtime/v2-19-le-105/lib/libssl.so.1.0.0" "/sw/slc7_x86-64/AliEn-Runtime/v2-19-le-105/lib/libcrypto.so.1.0.0" -o "/sw/BUILD/7b17cc866b7721c89d903ad45c0e2c405507adeb/O2/compiled_macros//sw/SOURCES/O2/7110-slc7_x86-64/0/GPU/TPCFastTransformation/macro/fastTransformQA_C.so"' failed!

Exit code=1

could it be we have too many open files? It looks weird. Anyways, it's most likely unrelated, so merging this.

@ktf ktf merged commit 55351a9 into AliceO2Group:dev Nov 23, 2021
@ktf

ktf commented Nov 23, 2021

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Regarding the issue with const / non const, the registry is separate between the two, so that we can avoid that people ask for const services as non-const, however we could indeed extend things so that the opposite is possible.

ezradlesser pushed a commit to ezradlesser/AliceO2 that referenced this pull request Dec 2, 2021
…AliceO2Group#7110)

This is supporting an upcoming extension of the O2 data model to allow
not only header-payload pairs but also sequences of payloads preceded
by a single header message. Such a sequence can be indicated by setting
splitPayloadIndex == splitpayloadParts with splitpayloadParts > 1.
A change in the version of DataHeader will be discussed, although there
is no change in the members of the header.

There is no change on the InputRecord API, only the payload size of the
current payload is provided in the DataRef object. It needs to be discussed,
which payload size is going to be provided in the data header in case of
a sequence with multiple payloads.

Changes alongside (most of them meanwhile moved to separate commits):
- make MessageSet the owner of FairMQMessage objects in a linear vector,
  enhances performance also for split payload sequences in header-paiload
  format
- generalizing DataRelayer to relay array of messages
- storing the payload message size in the DataRef

Extending and cleaning up DataRelayer test and benchmark
- allocating header stack through transport allocator and avoiding copy
- adding test for split parts in the header-payload scheme
- adding test for split parts in payloads sequence scheme

During the development a performance regression has been observed when
using o2::pmr::getMessage, needs to be investigated.
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3 participants